GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005160-TA|BGIBMGA005160-PA|IPR000462|CDP-alcohol
phosphatidyltransferase
         (339 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    24   1.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   5.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   5.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   5.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   5.0  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   5.0  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   5.0  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   5.0  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   5.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   8.8  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
          preprohormone protein.
          Length = 107

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 52 FTYNYSSENKKHFITLEKKALKNAFEHKKEQLKHTEHKLRL 92
          FTY++   N K   +LE+ A +NA +           KLRL
Sbjct: 24 FTYSHGWTNGKRSTSLEELANRNAIQSDNVFANCELQKLRL 64


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)

Query: 171 NLALGLLV--FAGITDLLDGWI 190
           +L +G LV  FAG+ DLL  W+
Sbjct: 71  DLFVGCLVMTFAGVNDLLGYWV 92


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 307 LKVLCGITAASTIVSAVSYLVSKDT 331
           +  L  I+A+  I  A S LVSKD+
Sbjct: 242 INTLLSISASCVIAFATSALVSKDS 266


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 69  KKALKNAFEH--KKEQLKHTEHKLRLKGEEIVRDIRHQGEVTGQKLRVKKEH 118
           K+ + N   H  K +QL++ ++K+ L+       ++H+ EV   +   ++EH
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREH 53


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 69  KKALKNAFEH--KKEQLKHTEHKLRLKGEEIVRDIRHQGEVTGQKLRVKKEH 118
           K+ + N   H  K +QL++ ++K+ L+       ++H+ EV   +   ++EH
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREH 53


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 69  KKALKNAFEH--KKEQLKHTEHKLRLKGEEIVRDIRHQGEVTGQKLRVKKEH 118
           K+ + N   H  K +QL++ ++K+ L+       ++H+ EV   +   ++EH
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREH 53


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 69  KKALKNAFEH--KKEQLKHTEHKLRLKGEEIVRDIRHQGEVTGQKLRVKKEH 118
           K+ + N   H  K +QL++ ++K+ L+       ++H+ EV   +   ++EH
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREH 53


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 69  KKALKNAFEH--KKEQLKHTEHKLRLKGEEIVRDIRHQGEVTGQKLRVKKEH 118
           K+ + N   H  K +QL++ ++K+ L+       ++H+ EV   +   ++EH
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREH 53


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 69  KKALKNAFEH--KKEQLKHTEHKLRLKGEEIVRDIRHQGEVTGQKLRVKKEH 118
           K+ + N   H  K +QL++ ++K+ L+       ++H+ EV   +   ++EH
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREH 53


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 69  KKALKNAFEH--KKEQLKHTEHKLRLKGEEIVRDIRHQGEVTGQKLRVKKEH 118
           K+ + N   H  K +QL++ ++K+ L+       ++H+ EV   +   ++EH
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWLIQQEREREH 53


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 69  KKALKNAFEH--KKEQLKHTEHKLRLKGEEIVRDIRHQGEVTGQKLRVKKEH 118
           K+ + N   H  K +QL++ + K+ L+       ++H+ EV   +   ++EH
Sbjct: 2   KRNISNYSHHDEKFKQLRNEDSKIDLRSRTKEERLQHRREVWLIQQEREREH 53


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.138    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,793
Number of Sequences: 429
Number of extensions: 3608
Number of successful extensions: 24
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 11
length of query: 339
length of database: 140,377
effective HSP length: 58
effective length of query: 281
effective length of database: 115,495
effective search space: 32454095
effective search space used: 32454095
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)