GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005159-TA|BGIBMGA005159-PA|IPR003210|Signal recognition
particle, 14 kDa protein, IPR009018|Signal recognition particle, 9 kDa
and 14 kDa protein
         (99 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    26   1.2  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   1.6  
SPAC19B12.09 |srp14||signal recognition particle subunit Srp14|S...    25   2.1  
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    25   2.1  
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    24   3.7  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    24   4.9  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    23   8.6  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    23   8.6  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    23   8.6  

>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 9   FQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNPEYKCLLR 50
           FQ   L    T+T    DG +   PRDGTP +  PE+   L+
Sbjct: 102 FQMVSLLKLATITE---DGVTFLSPRDGTPMLLTPEHSISLQ 140


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 55  SKKISTVVEQRDVEKFSTAYS 75
           S +I+TV  Q DV  FS+ YS
Sbjct: 816 SSQIATVFSQEDVPNFSSLYS 836


>SPAC19B12.09 |srp14||signal recognition particle subunit
          Srp14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 48 LLRAQS-KSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 84
          L+RA+S  ++KISTVVE      F  +Y+ + K  + G
Sbjct: 47 LIRAKSGAAEKISTVVELDYFTDFFQSYAEVCKGQIVG 84


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 45 YKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLK 79
          YK ++ A+  S +I + +EQ++  K +TA   L+K
Sbjct: 51 YKNVIGARRASWRIVSSIEQKEESKGNTAQVELIK 85


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
          Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 42 NPEYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 84
          NP+ + + RAQ+    IS  +  +DV K +   +   K  V+G
Sbjct: 6  NPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDG 48


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 44   EYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNL 77
            E+    +A   +K+    V+Q+ ++KF  A+S++
Sbjct: 1044 EFAAARKAAKNAKERFNAVKQKRLQKFQAAFSHI 1077


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 35  DGTPAVKNP-EYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTS 81
           D   A++N  E KC    Q+  + +    E  D+E+    YS+L+ +S
Sbjct: 310 DSELAIENILESKCFENEQAIIEGVKDFTEFPDLEETQIIYSDLIASS 357


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 13  RLAGSITMTMKRYDGRSKPMPRDGTPAVKNPEYKCLLRAQSKSKKISTVVEQ 64
           R AGS+ + +  +     P PR   P V         +A  +S  +  +  Q
Sbjct: 247 RFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQ 298


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 25  YDGRSKPMPRDGTPAVKNPEYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 84
           YD   KP  RD +P+ K+   +   R   K +   +  +Q      ++A S +    VNG
Sbjct: 200 YDRYIKPFERDSSPSFKSKRSESSTR---KIRNTRSSAQQESPIPETSAQSPVQTIQVNG 256


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.126    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 348,662
Number of Sequences: 5004
Number of extensions: 11381
Number of successful extensions: 39
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 9
length of query: 99
length of database: 2,362,478
effective HSP length: 63
effective length of query: 36
effective length of database: 2,047,226
effective search space: 73700136
effective search space used: 73700136
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)