Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005159-TA|BGIBMGA005159-PA|IPR003210|Signal recognition
particle, 14 kDa protein, IPR009018|Signal recognition particle, 9 kDa
and 14 kDa protein
(99 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1206 + 31727931-31728048,31728492-31728538,31728782-317289... 43 5e-05
05_07_0043 - 27284814-27285190,27285287-27285488,27285576-272856... 26 4.3
05_01_0426 + 3364341-3364713,3364823-3364963,3365389-3365510,336... 26 4.3
12_02_0034 - 12539201-12540439 26 5.6
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076... 25 7.5
12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342... 25 9.9
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124... 25 9.9
>04_04_1206 +
31727931-31728048,31728492-31728538,31728782-31728906,
31729067-31729133,31729221-31729283,31729429-31729498,
31729751-31729770,31729840-31729956,31730046-31730227,
31730586-31730640,31731604-31731697,31731791-31731900,
31733167-31733193,31733510-31733701
Length = 428
Score = 42.7 bits (96), Expect = 5e-05
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 1 FLAELTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNPEYKCLLRAQSKSKKIST 60
FL+ELT +++++ GS+ +TMKR + + + + EY+CL+RA K I T
Sbjct: 296 FLSELTSMYERSTEKGSVWVTMKRSSMKCQARLKKMAAKGEAVEYRCLVRATDGKKNICT 355
Query: 61 ---VVEQR------DVEKFSTAYSNLLKTSVN 83
+V+ R + KF +Y+ +LK ++
Sbjct: 356 AGSIVQLRAELSAKEYLKFQASYATVLKAHMH 387
>05_07_0043 -
27284814-27285190,27285287-27285488,27285576-27285650,
27285743-27285816,27285909-27285996,27286081-27286203,
27288374-27288580,27288631-27288636
Length = 383
Score = 26.2 bits (55), Expect = 4.3
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 2 LAELTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNPEYKCL----LRAQSKSKK 57
L + K Q+A L GS + K + +K +PR+ TP V+ P+ + L +RA K++
Sbjct: 196 LQDQRKAEQEA-LYGSKPSSSKSHS--TKKVPRNSTPGVQPPKSEILHSKTIRATKKTED 252
Query: 58 IST 60
I+T
Sbjct: 253 INT 255
>05_01_0426 +
3364341-3364713,3364823-3364963,3365389-3365510,
3365939-3366202,3366289-3366419,3366819-3367026,
3367121-3367186,3367276-3367353,3368038-3368079
Length = 474
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 31 PMPRDGTPAVKNPEYKCLLRAQSKSKKISTVVEQRDVEKFST 72
P PR A+ P+ +SKSK S + E D K S+
Sbjct: 3 PKPRKSVAALSGPKSSPARSTRSKSKPDSDIAEHDDSPKSSS 44
>12_02_0034 - 12539201-12540439
Length = 412
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 29 SKPMPRDGTPAVKNPEYKCLLRAQSKSKKISTVVEQRDVEKFSTAYS 75
SK + D + K+ YK + + + + KKI + + D K S+A S
Sbjct: 293 SKDVDGDKSSKKKSGGYKLMKKLKKERKKIEAFIREWDSNKESSASS 339
>12_01_1025 -
10506144-10506226,10506643-10506699,10507502-10507605,
10507884-10507937,10508107-10508193,10509027-10509214,
10509793-10509854,10510084-10510354,10510756-10510834,
10511715-10511913,10512816-10512960,10513324-10513416,
10514449-10514736
Length = 569
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 3/22 (13%)
Query: 22 MKRYDGRSKPMPRDGTPAVKNP 43
MKR+ +P+P+DG+PA K P
Sbjct: 1 MKRF---FQPVPKDGSPAKKRP 19
>12_02_0356 +
17915029-17916236,17932970-17933283,17933936-17934244,
17934613-17935439
Length = 885
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 29 SKPMPRDGTPAVKNPEYKCLLRAQSKSKKISTVVEQRDVEKFSTAYS 75
SK D + K+ YK + + + + KKI V+ + D + S+A S
Sbjct: 268 SKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAVIREWDSNEESSASS 314
>09_02_0565 +
10710770-10711003,10711368-10711527,10712277-10712477,
10712564-10712628,10712740-10712767,10712847-10712923,
10713023-10713109,10713572-10713622,10713857-10713937,
10714125-10714346,10714424-10714517,10714608-10714748,
10716383-10716444,10716519-10717106
Length = 696
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 3 AELTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNPEYKCLLRAQSK 54
A + LF L + ++ +G P PR P + + E+K + +K
Sbjct: 515 AAIYDLFNSNSLQTYVPFRIRHINGGGNPRPRQEDPGLTDAEFKKAMEQLNK 566
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.126 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,354
Number of Sequences: 37544
Number of extensions: 71137
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 7
length of query: 99
length of database: 14,793,348
effective HSP length: 71
effective length of query: 28
effective length of database: 12,127,724
effective search space: 339576272
effective search space used: 339576272
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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