Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005159-TA|BGIBMGA005159-PA|IPR003210|Signal recognition
particle, 14 kDa protein, IPR009018|Signal recognition particle, 9 kDa
and 14 kDa protein
(99 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X73459-1|CAA51838.1| 136|Homo sapiens signal recognition partic... 99 1e-21
U07857-1|AAA59066.1| 136|Homo sapiens 18 kDa Alu RNA binding pr... 99 1e-21
BC100031-1|AAI00032.1| 136|Homo sapiens signal recognition part... 99 1e-21
BC071716-1|AAH71716.1| 136|Homo sapiens signal recognition part... 99 1e-21
BC035495-1|AAH35495.1| 136|Homo sapiens signal recognition part... 99 1e-21
AB061546-1|BAB69067.1| 136|Homo sapiens signal recognition part... 99 1e-21
BC005288-1|AAH05288.1| 260|Homo sapiens TGF beta-inducible nucl... 32 0.25
AY443419-1|AAS00024.1| 260|Homo sapiens TGF-beta inducible nucl... 32 0.25
AJ012409-1|CAA10008.1| 260|Homo sapiens hypothetical protein pr... 32 0.25
AF372458-1|AAK53761.1| 260|Homo sapiens hairy cell leukemia pro... 32 0.25
AF077615-1|AAG43048.1| 260|Homo sapiens TGF beta inducible nucl... 32 0.25
AL391834-11|CAM21148.1| 1673|Homo sapiens DENN/MADD domain conta... 29 3.0
AL391834-3|CAM21140.1| 670|Homo sapiens DENN/MADD domain contai... 29 3.0
AL391834-2|CAM21139.1| 791|Homo sapiens DENN/MADD domain contai... 29 3.0
AL391834-1|CAM21138.1| 1146|Homo sapiens DENN/MADD domain contai... 29 3.0
AL161909-3|CAH70581.2| 1673|Homo sapiens DENN/MADD domain contai... 29 3.0
AK125842-1|BAC86313.1| 1557|Homo sapiens protein ( Homo sapiens ... 29 3.0
AK025705-1|BAB15221.1| 791|Homo sapiens protein ( Homo sapiens ... 29 3.0
>X73459-1|CAA51838.1| 136|Homo sapiens signal recognition
particle subunit 14 protein.
Length = 136
Score = 99 bits (238), Expect = 1e-21
Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 1 FLAELTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNP-EYKCLLRAQSKSKKIS 59
FL ELT+LFQK R +GS+ +T+K+YDGR+KP+P+ GT P + KCLLRA KKIS
Sbjct: 9 FLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKIS 68
Query: 60 TVVEQRDVEKFSTAYSNLLKTSVNG 84
TVV ++V KF AYSNLL+ +++G
Sbjct: 69 TVVSSKEVNKFQMAYSNLLRANMDG 93
>U07857-1|AAA59066.1| 136|Homo sapiens 18 kDa Alu RNA binding
protein protein.
Length = 136
Score = 99 bits (238), Expect = 1e-21
Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 1 FLAELTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNP-EYKCLLRAQSKSKKIS 59
FL ELT+LFQK R +GS+ +T+K+YDGR+KP+P+ GT P + KCLLRA KKIS
Sbjct: 9 FLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKIS 68
Query: 60 TVVEQRDVEKFSTAYSNLLKTSVNG 84
TVV ++V KF AYSNLL+ +++G
Sbjct: 69 TVVSSKEVNKFQMAYSNLLRANMDG 93
>BC100031-1|AAI00032.1| 136|Homo sapiens signal recognition
particle 14kDa (homologous Alu RNA binding protein)
protein.
Length = 136
Score = 99 bits (238), Expect = 1e-21
Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 1 FLAELTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNP-EYKCLLRAQSKSKKIS 59
FL ELT+LFQK R +GS+ +T+K+YDGR+KP+P+ GT P + KCLLRA KKIS
Sbjct: 9 FLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKIS 68
Query: 60 TVVEQRDVEKFSTAYSNLLKTSVNG 84
TVV ++V KF AYSNLL+ +++G
Sbjct: 69 TVVSSKEVNKFQMAYSNLLRANMDG 93
>BC071716-1|AAH71716.1| 136|Homo sapiens signal recognition
particle 14kDa (homologous Alu RNA binding protein)
protein.
Length = 136
Score = 99 bits (238), Expect = 1e-21
Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 1 FLAELTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNP-EYKCLLRAQSKSKKIS 59
FL ELT+LFQK R +GS+ +T+K+YDGR+KP+P+ GT P + KCLLRA KKIS
Sbjct: 9 FLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKIS 68
Query: 60 TVVEQRDVEKFSTAYSNLLKTSVNG 84
TVV ++V KF AYSNLL+ +++G
Sbjct: 69 TVVSSKEVNKFQMAYSNLLRANMDG 93
>BC035495-1|AAH35495.1| 136|Homo sapiens signal recognition
particle 14kDa (homologous Alu RNA binding protein)
protein.
Length = 136
Score = 99 bits (238), Expect = 1e-21
Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 1 FLAELTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNP-EYKCLLRAQSKSKKIS 59
FL ELT+LFQK R +GS+ +T+K+YDGR+KP+P+ GT P + KCLLRA KKIS
Sbjct: 9 FLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKIS 68
Query: 60 TVVEQRDVEKFSTAYSNLLKTSVNG 84
TVV ++V KF AYSNLL+ +++G
Sbjct: 69 TVVSSKEVNKFQMAYSNLLRANMDG 93
>AB061546-1|BAB69067.1| 136|Homo sapiens signal recognition
particle 14kD protein.
Length = 136
Score = 99 bits (238), Expect = 1e-21
Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 1 FLAELTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNP-EYKCLLRAQSKSKKIS 59
FL ELT+LFQK R +GS+ +T+K+YDGR+KP+P+ GT P + KCLLRA KKIS
Sbjct: 9 FLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKIS 68
Query: 60 TVVEQRDVEKFSTAYSNLLKTSVNG 84
TVV ++V KF AYSNLL+ +++G
Sbjct: 69 TVVSSKEVNKFQMAYSNLLRANMDG 93
>BC005288-1|AAH05288.1| 260|Homo sapiens TGF beta-inducible nuclear
protein 1 protein.
Length = 260
Score = 32.3 bits (70), Expect = 0.25
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 7 KLFQKARLAGSITM--TMKRYDGRSKPMPRDG-TPAVKNPEYKCLLRAQSKSKKISTVVE 63
KL+ K R A I M T+K ++ R+ D TP P Y QS++K +S +++
Sbjct: 48 KLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIK 107
Query: 64 QRDVEK 69
Q+ EK
Sbjct: 108 QKRKEK 113
>AY443419-1|AAS00024.1| 260|Homo sapiens TGF-beta inducible nuclear
protein protein.
Length = 260
Score = 32.3 bits (70), Expect = 0.25
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 7 KLFQKARLAGSITM--TMKRYDGRSKPMPRDG-TPAVKNPEYKCLLRAQSKSKKISTVVE 63
KL+ K R A I M T+K ++ R+ D TP P Y QS++K +S +++
Sbjct: 48 KLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIK 107
Query: 64 QRDVEK 69
Q+ EK
Sbjct: 108 QKRKEK 113
>AJ012409-1|CAA10008.1| 260|Homo sapiens hypothetical protein
protein.
Length = 260
Score = 32.3 bits (70), Expect = 0.25
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 7 KLFQKARLAGSITM--TMKRYDGRSKPMPRDG-TPAVKNPEYKCLLRAQSKSKKISTVVE 63
KL+ K R A I M T+K ++ R+ D TP P Y QS++K +S +++
Sbjct: 48 KLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIK 107
Query: 64 QRDVEK 69
Q+ EK
Sbjct: 108 QKRKEK 113
>AF372458-1|AAK53761.1| 260|Homo sapiens hairy cell leukemia
protein 1 protein.
Length = 260
Score = 32.3 bits (70), Expect = 0.25
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 7 KLFQKARLAGSITM--TMKRYDGRSKPMPRDG-TPAVKNPEYKCLLRAQSKSKKISTVVE 63
KL+ K R A I M T+K ++ R+ D TP P Y QS++K +S +++
Sbjct: 48 KLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIK 107
Query: 64 QRDVEK 69
Q+ EK
Sbjct: 108 QKRKEK 113
>AF077615-1|AAG43048.1| 260|Homo sapiens TGF beta inducible nuclear
protein TINP1 protein.
Length = 260
Score = 32.3 bits (70), Expect = 0.25
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 7 KLFQKARLAGSITM--TMKRYDGRSKPMPRDG-TPAVKNPEYKCLLRAQSKSKKISTVVE 63
KL+ K R A I M T+K ++ R+ D TP P Y QS++K +S +++
Sbjct: 48 KLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIK 107
Query: 64 QRDVEK 69
Q+ EK
Sbjct: 108 QKRKEK 113
>AL391834-11|CAM21148.1| 1673|Homo sapiens DENN/MADD domain containing
4C protein.
Length = 1673
Score = 28.7 bits (61), Expect = 3.0
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 10 QKARLAGSITMTMKRYDGRSKPMPRD-GTPAVKNPEYKCLLRAQSKSKKISTVVEQ---- 64
++ R +G T + + RS +P D G+PA +NPE + A S+SK + +Q
Sbjct: 1022 EENRESGMTTAFIHALERRSS-LPLDHGSPAQENPESEKSSPAVSRSKTFTGRFKQQTPS 1080
Query: 65 RDVEKFSTAYSNLLKTSVNG 84
R ++ ST+ S L+++S +G
Sbjct: 1081 RTHKERSTSLSALVRSSPHG 1100
>AL391834-3|CAM21140.1| 670|Homo sapiens DENN/MADD domain
containing 4C protein.
Length = 670
Score = 28.7 bits (61), Expect = 3.0
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 10 QKARLAGSITMTMKRYDGRSKPMPRD-GTPAVKNPEYKCLLRAQSKSKKISTVVEQ---- 64
++ R +G T + + RS +P D G+PA +NPE + A S+SK + +Q
Sbjct: 19 EENRESGMTTAFIHALERRSS-LPLDHGSPAQENPESEKSSPAVSRSKTFTGRFKQQTPS 77
Query: 65 RDVEKFSTAYSNLLKTSVNG 84
R ++ ST+ S L+++S +G
Sbjct: 78 RTHKERSTSLSALVRSSPHG 97
>AL391834-2|CAM21139.1| 791|Homo sapiens DENN/MADD domain
containing 4C protein.
Length = 791
Score = 28.7 bits (61), Expect = 3.0
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 10 QKARLAGSITMTMKRYDGRSKPMPRD-GTPAVKNPEYKCLLRAQSKSKKISTVVEQ---- 64
++ R +G T + + RS +P D G+PA +NPE + A S+SK + +Q
Sbjct: 204 EENRESGMTTAFIHALERRSS-LPLDHGSPAQENPESEKSSPAVSRSKTFTGRFKQQTPS 262
Query: 65 RDVEKFSTAYSNLLKTSVNG 84
R ++ ST+ S L+++S +G
Sbjct: 263 RTHKERSTSLSALVRSSPHG 282
>AL391834-1|CAM21138.1| 1146|Homo sapiens DENN/MADD domain
containing 4C protein.
Length = 1146
Score = 28.7 bits (61), Expect = 3.0
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 10 QKARLAGSITMTMKRYDGRSKPMPRD-GTPAVKNPEYKCLLRAQSKSKKISTVVEQ---- 64
++ R +G T + + RS +P D G+PA +NPE + A S+SK + +Q
Sbjct: 495 EENRESGMTTAFIHALERRSS-LPLDHGSPAQENPESEKSSPAVSRSKTFTGRFKQQTPS 553
Query: 65 RDVEKFSTAYSNLLKTSVNG 84
R ++ ST+ S L+++S +G
Sbjct: 554 RTHKERSTSLSALVRSSPHG 573
>AL161909-3|CAH70581.2| 1673|Homo sapiens DENN/MADD domain containing
4C protein.
Length = 1673
Score = 28.7 bits (61), Expect = 3.0
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 10 QKARLAGSITMTMKRYDGRSKPMPRD-GTPAVKNPEYKCLLRAQSKSKKISTVVEQ---- 64
++ R +G T + + RS +P D G+PA +NPE + A S+SK + +Q
Sbjct: 1022 EENRESGMTTAFIHALERRSS-LPLDHGSPAQENPESEKSSPAVSRSKTFTGRFKQQTPS 1080
Query: 65 RDVEKFSTAYSNLLKTSVNG 84
R ++ ST+ S L+++S +G
Sbjct: 1081 RTHKERSTSLSALVRSSPHG 1100
>AK125842-1|BAC86313.1| 1557|Homo sapiens protein ( Homo sapiens
cDNA FLJ43854 fis, clone TESTI4007064. ).
Length = 1557
Score = 28.7 bits (61), Expect = 3.0
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 10 QKARLAGSITMTMKRYDGRSKPMPRD-GTPAVKNPEYKCLLRAQSKSKKISTVVEQ---- 64
++ R +G T + + RS +P D G+PA +NPE + A S+SK + +Q
Sbjct: 906 EENRESGMTTAFIHALERRSS-LPLDHGSPAQENPESEKSSPAVSRSKTFTGRFKQQTPS 964
Query: 65 RDVEKFSTAYSNLLKTSVNG 84
R ++ ST+ S L+++S +G
Sbjct: 965 RTHKERSTSLSALVRSSPHG 984
>AK025705-1|BAB15221.1| 791|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22052 fis, clone HEP09477. ).
Length = 791
Score = 28.7 bits (61), Expect = 3.0
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 10 QKARLAGSITMTMKRYDGRSKPMPRD-GTPAVKNPEYKCLLRAQSKSKKISTVVEQ---- 64
++ R +G T + + RS +P D G+PA +NPE + A S+SK + +Q
Sbjct: 204 EENRESGMTTAFIHALERRSS-LPLDHGSPAQENPESEKSSPAVSRSKTFTGRFKQQTPS 262
Query: 65 RDVEKFSTAYSNLLKTSVNG 84
R ++ ST+ S L+++S +G
Sbjct: 263 RTHKERSTSLSALVRSSPHG 282
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.314 0.126 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,725,334
Number of Sequences: 224733
Number of extensions: 367638
Number of successful extensions: 953
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 18
length of query: 99
length of database: 73,234,838
effective HSP length: 76
effective length of query: 23
effective length of database: 56,155,130
effective search space: 1291567990
effective search space used: 1291567990
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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