GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005159-TA|BGIBMGA005159-PA|IPR003210|Signal recognition
particle, 14 kDa protein, IPR009018|Signal recognition particle, 9 kDa
and 14 kDa protein
         (99 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2820|AAF55781.1|  142|Drosophila melanogaster CG5417-PA...    92   1e-19
BT001665-1|AAN71420.1|  120|Drosophila melanogaster RE48595p pro...    90   4e-19

>AE014297-2820|AAF55781.1|  142|Drosophila melanogaster CG5417-PA
           protein.
          Length = 142

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 1/100 (1%)

Query: 1   FLAELTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNPE-YKCLLRAQSKSKKIS 59
           F+  L K+   A+   S T+T KRYDG  KP+PR+G P +  PE Y CL+RAQSKS+KIS
Sbjct: 42  FILRLEKIANAAKKDSSFTLTFKRYDGNDKPVPREGRPPLPKPETYMCLMRAQSKSQKIS 101

Query: 60  TVVEQRDVEKFSTAYSNLLKTSVNGXXXXXXXXXXAMATQ 99
           TVV Q DV    + YS  +K+ ++G          A AT+
Sbjct: 102 TVVRQEDVPAMMSMYSQFMKSKMDGLKRVKKVKSKAKATK 141


>BT001665-1|AAN71420.1|  120|Drosophila melanogaster RE48595p
           protein.
          Length = 120

 Score = 90.2 bits (214), Expect = 4e-19
 Identities = 42/85 (49%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 1   FLAELTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNPE-YKCLLRAQSKSKKIS 59
           F+  L K+   A+   S T+T KRYDG  KP+PR+G P +  PE Y CL+RAQSKS+KIS
Sbjct: 20  FILRLEKIANAAKKDSSFTLTFKRYDGNDKPVPREGRPPLPKPETYMCLMRAQSKSQKIS 79

Query: 60  TVVEQRDVEKFSTAYSNLLKTSVNG 84
           TVV Q DV    + YS  +K+ ++G
Sbjct: 80  TVVRQEDVPAMMSMYSQFMKSKMDG 104


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.314    0.126    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,742,960
Number of Sequences: 52641
Number of extensions: 125266
Number of successful extensions: 419
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 2
length of query: 99
length of database: 24,830,863
effective HSP length: 73
effective length of query: 26
effective length of database: 20,988,070
effective search space: 545689820
effective search space used: 545689820
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)