Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005159-TA|BGIBMGA005159-PA|IPR003210|Signal recognition
particle, 14 kDa protein, IPR009018|Signal recognition particle, 9 kDa
and 14 kDa protein
(99 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022973-8|AAC25801.1| 116|Caenorhabditis elegans Hypothetical ... 65 7e-12
Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical pr... 29 0.55
Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical pr... 29 0.55
AC024791-34|AAF60670.2| 440|Caenorhabditis elegans Hypothetical... 28 1.3
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 26 3.9
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am... 26 3.9
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am... 26 3.9
Z81083-4|CAB03102.1| 645|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z70753-2|CAA94760.1| 275|Caenorhabditis elegans Hypothetical pr... 25 6.8
>AF022973-8|AAC25801.1| 116|Caenorhabditis elegans Hypothetical
protein F25G6.8 protein.
Length = 116
Score = 65.3 bits (152), Expect = 7e-12
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 1 FLAELTKLFQKARLAG--SITMTMKRYDGRSKPMPRDGTPAVKNPEYKCLLRAQSKSKKI 58
FL +LT ++ +++ G S+ +TMK YDGR+K MP+ G+ + E C+ RA+ SKKI
Sbjct: 13 FLQKLTAFYRDSKIRGPKSVYVTMKPYDGRTKAMPK-GSTFKEGDEISCIFRAKWGSKKI 71
Query: 59 STVVEQRDVEKFSTAYSNLL 78
+T V+ ++V KF T YS ++
Sbjct: 72 ATEVKAKEVNKFHTQYSAII 91
>Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 29.1 bits (62), Expect = 0.55
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 2 LAELTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNPEYKCLLRAQSKSKKI 58
+ E+ K+ Q + + T K R P P TPA K EYK L+ + I
Sbjct: 482 MVEMPKIEQSEEVEDVVMYTPKPPPSRHLPKPSVRTPAEKMDEYKKLIEPSAAPPSI 538
>Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 29.1 bits (62), Expect = 0.55
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 2 LAELTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNPEYKCLLRAQSKSKKI 58
+ E+ K+ Q + + T K R P P TPA K EYK L+ + I
Sbjct: 482 MVEMPKIEQSEEVEDVVMYTPKPPPSRHLPKPSVRTPAEKMDEYKKLIEPSAAPPSI 538
>AC024791-34|AAF60670.2| 440|Caenorhabditis elegans Hypothetical
protein Y47G6A.25 protein.
Length = 440
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 5 LTKLFQKARLAGSITMTMK---RYDGRSKPMPRDGTPAVKNPEYKCLLRAQSKSKKISTV 61
+T + KA L + T+K + S+P+P D + E K L R S+ ++I++
Sbjct: 330 ITLIQLKASLGKCLWKTLKFVNQSGEHSRPLPDDSYEQIAPIERKQLKRRLSRIERIASS 389
Query: 62 VEQR--DVEKFSTAYSNL 77
VE++ E F+ Y L
Sbjct: 390 VEEKRAQFEAFAREYDAL 407
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 21 TMKRYDGRSKPMPRDGTPA---VKNPEYK 46
++KR D +KP+P G P+ +KNP K
Sbjct: 46 SLKRKDAPTKPVPSPGAPSPVPIKNPVKK 74
>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform a protein.
Length = 1212
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 33 PRD--GTPAVKNPEYKCLLRAQSKSKKISTVVEQ 64
PRD TP +P Y+ L S S+K+STVV +
Sbjct: 589 PRDLPETPTPTSPIYRPLSSLSSFSRKLSTVVRR 622
>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform b protein.
Length = 1454
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 33 PRD--GTPAVKNPEYKCLLRAQSKSKKISTVVEQ 64
PRD TP +P Y+ L S S+K+STVV +
Sbjct: 589 PRDLPETPTPTSPIYRPLSSLSSFSRKLSTVVRR 622
>Z81083-4|CAB03102.1| 645|Caenorhabditis elegans Hypothetical
protein F44F1.5 protein.
Length = 645
Score = 25.4 bits (53), Expect = 6.8
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 5 LTKLFQKARLAGSITMTMKRYDGRSKPMPRDGTPAVK---NPEYKCLLRAQSKSKKISTV 61
LTK + R A T +K + R K + V+ NP+ K +L + + +KI
Sbjct: 349 LTKEYVILRAARVKTFAVKIEEERQKKLDEKEQLKVQDQENPKDKQILEIKLEMEKIKKS 408
Query: 62 VEQRD 66
+EQRD
Sbjct: 409 LEQRD 413
>Z70753-2|CAA94760.1| 275|Caenorhabditis elegans Hypothetical
protein F40F9.3 protein.
Length = 275
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 35 DGTPAVKNPEYKCLLRAQSKSKKISTVVEQRDV 67
DG P N + K LL K KK+ T++ +R +
Sbjct: 120 DGEPVYDNAKCKGLLVKALKEKKVCTLLIERGI 152
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.314 0.126 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,909
Number of Sequences: 27539
Number of extensions: 66402
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 9
length of query: 99
length of database: 12,573,161
effective HSP length: 70
effective length of query: 29
effective length of database: 10,645,431
effective search space: 308717499
effective search space used: 308717499
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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