GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005159-TA|BGIBMGA005159-PA|IPR003210|Signal recognition
particle, 14 kDa protein, IPR009018|Signal recognition particle, 9 kDa
and 14 kDa protein
         (99 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   1.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   1.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   3.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   3.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   4.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   4.9  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    19   8.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    19   8.6  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
          protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 25 YDGRSKPMPRDGTPAVKNPEYKCLLRAQSKSKKISTVVEQ 64
          ++G S P  R+  P  KN    C L  + KS  +  VV+Q
Sbjct: 19 FEGASSPKKRNKNPQPKNA--VCALN-ELKSGAVYKVVDQ 55


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 12/55 (21%), Positives = 23/55 (41%)

Query: 23  KRYDGRSKPMPRDGTPAVKNPEYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNL 77
           ++Y  RSK   RD T   ++ E K +    +K+   +      +   +   Y N+
Sbjct: 57  RKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYKKLYYNI 111


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 48  LLRAQSKSKKISTVVEQRDVEK 69
           +LR Q+K   + ++V  +D E+
Sbjct: 253 MLREQAKKMNVKSLVSNQDKER 274


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 48  LLRAQSKSKKISTVVEQRDVEK 69
           +LR Q+K   + ++V  +D E+
Sbjct: 253 MLREQAKKMNVKSLVSNQDKER 274


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
          determiner protein.
          Length = 191

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 23 KRYDGRSKPMPRDGTPAVKNPEYKCLLRAQSKS 55
          ++Y  RSK   RD T   ++ E K +    +K+
Sbjct: 57 RKYRERSKERSRDRTERERSREPKIISSLSNKT 89


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 23  KRYDGRSKPMPRDGTPAVKNPEYKCLLRAQSKS 55
           ++Y  RSK   RD T   ++ E K +    +K+
Sbjct: 290 RKYRERSKERSRDRTERERSREPKIISSLSNKT 322


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding
          protein ASP5 protein.
          Length = 143

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 63 EQRDVEKFSTAYSNLLKTSVNG 84
          +  D++ ++T    LL+T  NG
Sbjct: 61 DDHDLQCYTTCIMKLLRTFKNG 82


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 55  SKKISTVVEQRDVEK 69
           SKKI   +E +D+ K
Sbjct: 118 SKKIKKTMENKDITK 132


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.126    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,007
Number of Sequences: 429
Number of extensions: 803
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 99
length of database: 140,377
effective HSP length: 49
effective length of query: 50
effective length of database: 119,356
effective search space:  5967800
effective search space used:  5967800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)