GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005158-TA|BGIBMGA005158-PA|IPR007194|Transport protein
particle (TRAPP) component, Bet3, IPR013627|DNA polymerase alpha,
subunit B N-terminal, IPR007185|DNA polymerase epsilon subunit B
         (696 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    29   0.17 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   6.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   8.4  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 0.17
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 422 RGDRFIAQEVYCDAIQPLPDHKFDIAGKLSMVAVAG-PYTTSD---NMAYEPLKDMVTY- 476
           RGD  I  +   D+   L    FD   + S +AVAG  +T  D    MA  P+ + + Y 
Sbjct: 210 RGDALIIYQNSDDSFHRLTSKTFDNDLRYSELAVAGESFTVHDGIFGMALSPVTNNLYYS 269

Query: 477 -INTHKPHVVIMTGPFIDSEHSK 498
            + +H  + V M  PF+ S++ +
Sbjct: 270 PLTSHSLYYVNME-PFMKSQYEE 291


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 539 DAFHVNVYPTPPYVSRRKHPNIHFVPD--PCTLTINGIHVGVTSTDILMHISQ 589
           D F VN+      + R  H ++  VPD  P  +  N + V    ++   + SQ
Sbjct: 542 DEFVVNLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVVSEDGSETFKYSSQ 594


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 600 KLSRLASHVLSQQTYYPLCPAP 621
           K S+ + H  + QT+  LCP P
Sbjct: 364 KCSQTSVHYSNGQTHSQLCPTP 385


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,007
Number of Sequences: 429
Number of extensions: 9172
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 3
length of query: 696
length of database: 140,377
effective HSP length: 62
effective length of query: 634
effective length of database: 113,779
effective search space: 72135886
effective search space used: 72135886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)