GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005157-TA|BGIBMGA005157-PA|IPR002125|CMP/dCMP deaminase,
zinc-binding
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    88   1e-18
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    37   0.004
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    36   0.006
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    32   0.094
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    29   0.66 
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    28   2.0  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   6.2  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   6.2  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   8.2  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    26   8.2  

>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 9/116 (7%)

Query: 205 RHAEINCIDQILEYCRLNNIDYKLYFKNVIVYVTVEPCIMCAAALNNLNIREVVYGCPND 264
           RHAE+  I++ILE+   +       FK   +YVTVEPC+MCAAAL  L+I+ V +GC ND
Sbjct: 243 RHAELIAIEKILEHYPAS------VFKETTLYVTVEPCLMCAAALKQLHIKAVYFGCGND 296

Query: 265 RFGG-NTVLDVS--NFYEQNYILNGNLLADEAMMLLKEFYKGINPNAPESKVKKDK 317
           RFGG  +V  ++     + +Y +   L   EA+ML++EFY   N  AP  + KK +
Sbjct: 297 RFGGCGSVFSINKDQSIDPSYPVYPGLFYSEAVMLMREFYVQENVKAPVPQSKKQR 352


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 175 KEVPVGCVFTV----NGQIIAESKNSVNATHNPTRHAEINCIDQILEY---CRLNNIDY- 226
           K   +GC   +       ++A S +  +   NP  H  +N I+ + +     R N  D  
Sbjct: 176 KHGEIGCAAAIYDPTTDTVLAVSVDERSKLKNPINHCVMNAINLVAKRELSRRQNRTDGS 235

Query: 227 --KLYFKNVIVYVTVEPCIMCAAALNNLNIREVVY 259
             +   K++ V +T EPC+MC+  L +  IR ++Y
Sbjct: 236 KDRYLCKDLTVVMTHEPCVMCSMGLLHSRIRRLIY 270


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 10/88 (11%)

Query: 178 PVGCVFT-VNGQIIAESKNSVNATHNPTRHAEINCIDQILEYCRLNNIDYKLYFKNVIVY 236
           P GC+    N  +I  + N V    + T+HAE   +  I +  R          +   +Y
Sbjct: 31  PFGCIIVDENDNVIMSAGNRV-PDGDVTQHAETRAVGLITKTRR--------DLEKCTLY 81

Query: 237 VTVEPCIMCAAALNNLNIREVVYGCPND 264
            + EPC MC+ A+    IR +++G  N+
Sbjct: 82  TSTEPCAMCSGAIFWSGIRRMIFGLSNE 109


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 232 NVIVYVTVEPCIMCAAALNNLNIREVVY 259
           N I+Y    PC+ C+  +  L I+EVVY
Sbjct: 289 NAILYCDTCPCLTCSVKITQLGIKEVVY 316


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 205 RHAEINCIDQILEYCR-LNNIDYKLYFKNVIVYVTVEPCIMCAAALNN-----LNIREVV 258
           R   +  I ++  Y R  NNI  K   K +IV +T E  +  A  L       LN+REVV
Sbjct: 816 RVKRMQTIIELARYVREQNNISLKTPLKTLIVILTNEEYLEDAKLLERYIAEELNVREVV 875

Query: 259 YGCPNDRFG 267
           +    +++G
Sbjct: 876 FTSNEEKYG 884


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 25  LGINGSVGKPPLEIKSRPVNGFDCKRTEVSGKRFWG-LFKNLCG---EPNNFFESSF 77
           L ++   G  P  IK R   GF+     ++G   W  + +NL     EPNN   +S+
Sbjct: 197 LMLDKKTGLDPKGIKLRAAQGFEAADFFITGYWIWSKVIENLAAIGYEPNNMLSASY 253


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 190  IAESKNSVNATHNPTRHAEINCIDQILEYCRLNNIDYKLYFKNVIVYVTVEPCIMCAAAL 249
            IA  +NSV A  N +R    NC + +L Y   N +D      NV + +      +     
Sbjct: 1580 IALQRNSVYAMFNSSRPGNKNCNEMLLTYLS-NALDENYLHWNVKLAILKNAPHLKKIMS 1638

Query: 250  NN--LNIREVVYGCPND 264
            N   L  ++++Y C  D
Sbjct: 1639 NEEFLLYKDILYRCYED 1655


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 273 DVSNFYEQNYILNGNLLADEAMMLLKEFYKGINP 306
           D S+ Y  N++    L+ D  + +L++FY+ ++P
Sbjct: 165 DASSEYVLNFLPYLTLIRDTRVNILEQFYRSLSP 198


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 82  LPEQWMKNNGCNLTPGDFKAAEIDSLYHICDPI--FKKVLELYD 123
           +P     NNG ++     K++E     HIC  I    K+L+ +D
Sbjct: 205 IPTTMRSNNGLSILASRLKSSEAPMHVHICHAIKNLPKILKKHD 248


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 114 IFKKVLELYDVHIIVAI-GKFCELRAQKILDKYSFRNKIQIKSN 156
           +  ++L+L +V+ + A  G+   L   K LD Y+  N+I  K N
Sbjct: 305 VLYRLLKLKNVNALTAEDGRVVSLHNMKRLDAYAIANRIMRKDN 348


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.139    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,685
Number of Sequences: 5004
Number of extensions: 68549
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 10
length of query: 319
length of database: 2,362,478
effective HSP length: 73
effective length of query: 246
effective length of database: 1,997,186
effective search space: 491307756
effective search space used: 491307756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)