GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005157-TA|BGIBMGA005157-PA|IPR002125|CMP/dCMP deaminase,
zinc-binding
         (319 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   1.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.7  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   4.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.7  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 218 YCRLNNIDYKLYFKNVIVYVTVEP 241
           Y   NN + KLY+KN I+ +   P
Sbjct: 94  YNNYNNYNKKLYYKNYIINIEQIP 117


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 222 NNIDYKLYFKNVIVYVTVEP 241
           NN + KLY+KN I+ +   P
Sbjct: 109 NNYNKKLYYKNYIINIEQIP 128


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 222 NNIDYKLYFKNVIVYVTVEP 241
           NN + KLY+KN I+ +   P
Sbjct: 339 NNYNKKLYYKNYIINIEQIP 358


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 222 NNIDYKLYFKNVIVYVTVEP 241
           NN + KLY+KN I+ +   P
Sbjct: 334 NNYNKKLYYKNYIINIEQIP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 10   QTGVPFGEISSVRDWLGINGSVGKPPL-EIKSRPVNG 45
            Q G  +G+  +  D  G  GSVG+  +   ++ PV+G
Sbjct: 1819 QYGSQYGQYGAPYDHYGSRGSVGRRSVGSARNIPVSG 1855


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 92  CNLTPGDFKAAEIDSLYHIC 111
           C++ P D   +   S+YH+C
Sbjct: 27  CSIKPKDHNGSIYWSMYHLC 46


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 180 GCVFTVNGQIIAESKNSVNATHNPTRHAEINCIDQILEYCRLNNI 224
           GC+  V+G   A+ ++  N + NP   A+ + + QIL +  L N+
Sbjct: 349 GCLL-VSGIASAKVRSMFNDSGNPILKAKPSEVVQILGWKELPNV 392


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.139    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,220
Number of Sequences: 429
Number of extensions: 4620
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 319
length of database: 140,377
effective HSP length: 58
effective length of query: 261
effective length of database: 115,495
effective search space: 30144195
effective search space used: 30144195
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)