GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005156-TA|BGIBMGA005156-PA|IPR002076|GNS1/SUR4 membrane
protein
         (216 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   3.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   3.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.9  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 179 QDCAFPRQPAYILIPQNLFMVILFL 203
           +D +  R P YI++P  +   ++F+
Sbjct: 41  EDSSIRRDPLYIVLPITVIYAVIFV 65


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 110 GIVKWVPGGHGMM 122
           GI  WVPG H  +
Sbjct: 338 GIPNWVPGNHDQL 350


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 110 GIVKWVPGGHGMM 122
           GI  WVPG H  +
Sbjct: 338 GIPNWVPGNHDQL 350


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 19  SRTQDWFLMRSPWLGLGILAIYLMA 43
           S   DW+ + S W  L  LA+  +A
Sbjct: 428 SPLNDWYSLASSWPALVPLALGFLA 452


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.333    0.144    0.475 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,166
Number of Sequences: 429
Number of extensions: 2434
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 216
length of database: 140,377
effective HSP length: 55
effective length of query: 161
effective length of database: 116,782
effective search space: 18801902
effective search space used: 18801902
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 42 (21.0 bits)