GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005153-TA|BGIBMGA005153-PA|IPR000182|GCN5-related
N-acetyltransferase
         (108 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   2.0  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   3.4  
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.4  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    24   4.6  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    24   4.6  
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    23   8.0  

>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 63  SAAEFFKACGYSIDETSP 80
           SAAE +K C YS+D  +P
Sbjct: 205 SAAEIWKHCHYSLDPKTP 222


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 66  EFFKACGYSIDETSPPKDEAAHYEILSKATVKST 99
           E   + GY+I E  P   E+ H E+L K T   T
Sbjct: 286 ELLPSEGYAILEPPPGYLESIHPELLQKGTTLDT 319


>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 132

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 76  DETSPPKDEAAHYEILSKATVKSTDESAV 104
           DE+    DE    E ++ + V  TDESAV
Sbjct: 56  DESDVGTDEQKQQEGVNSSAVSDTDESAV 84


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 82  KDEAAHYEILSKATVKSTD 100
           KDEA  Y + SK  V+ TD
Sbjct: 115 KDEAEFYSLFSKKIVEETD 133


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 71  CGYSIDETSPPKDEAAHYEILSKATVKSTDES 102
           C Y I   +P   E +HY++LS       D+S
Sbjct: 666 CKYEIQRLTPAS-ELSHYQLLSHIVTHLHDDS 696


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 37  VLSVLEKLARATHMRCVRLTALTHNPSAAEFFKACGYSI 75
           ++  LE +  + +   V L     N  A +F+K  GYS+
Sbjct: 92  MMDYLETVGNSENAFFVDLFVRASNALAIDFYKGLGYSV 130


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.131    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,790
Number of Sequences: 5004
Number of extensions: 11861
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 6
length of query: 108
length of database: 2,362,478
effective HSP length: 64
effective length of query: 44
effective length of database: 2,042,222
effective search space: 89857768
effective search space used: 89857768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)