GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005152-TA|BGIBMGA005152-PA|undefined
         (141 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    51   8e-08
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    28   0.63 
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    28   0.63 
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    27   1.1  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   2.5  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    25   4.4  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    25   5.8  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   5.8  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.8  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    24   7.7  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    24   7.7  

>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 50.8 bits (116), Expect = 8e-08
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 6/105 (5%)

Query: 38  KLQDLASLCKELLVF-RNLDLEVDMYIQKVTELDKKVLQWAIDLTEKNMKTLYETCAWGW 96
           K Q++ ++  E + F +NL + V++Y      L+K +LQ   +L +KNM+ LY   ++GW
Sbjct: 16  KTQEIKNVTLEDVDFLKNLGVWVEIY----HHLEKGLLQQCFNLVKKNMEALYRQSSFGW 71

Query: 97  NPNRKLEEMTDDAAWYLIAREKNG-TLLAFSHFRFDLDFGEPVLY 140
           + + KL+EM  +   Y+   EK    L+ F  F   ++ G   LY
Sbjct: 72  DDSEKLKEMEMEKLEYICIFEKTSKKLVGFLSFEDTVEAGLTCLY 116


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 11/25 (44%), Positives = 19/25 (76%)

Query: 11   KQKDKRLARKQEQRRIADAMTHVTT 35
            KQ+D  LAR++E RR  ++++ +TT
Sbjct: 983  KQRDSLLARREELRRSQESISELTT 1007


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 1   MGKKSITATNKQKDKRLARKQEQRRIADAMTHVTTANKLQDLASL 45
           +G++SIT + K+KD+R      +R+ A+A     +   L D+  L
Sbjct: 135 VGQESITGSAKRKDRRSKTNGSKRQKAEANREPPSDISLSDIGGL 179


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 21  QEQRRIADAMTHVTTANKLQDLASLCKELLVFRNLDLEVDMYIQKVTELDKKVLQWAIDL 80
           +E R++ +    +T ANK  D   + +EL V + ++   +    + T L+ ++L+    L
Sbjct: 324 KEARKVKEES--LTLANKFSDYDEIKRELSVLKQIEFSGEHATHENTSLESQLLKREKQL 381

Query: 81  TEKNMK 86
           +E+  K
Sbjct: 382 SEELAK 387


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 1   MGKKSITATNKQKDKRLARKQEQRRIADAMTHVTTANKLQDLASLCKELLVFRN 54
           + + S+T+  K  +   A  Q+ +  A +    TT N  + L S+C   + F N
Sbjct: 635 LARASLTSGLKSNNTLRALSQDLKNCAKSKDDSTTQNLTESLGSVCYPSMPFFN 688


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 12/82 (14%)

Query: 17  LARKQEQRRIADAMTHVTTANKLQDLASLCKEL-----LVFRNLDL-----EVDMYIQKV 66
           +A K+E+R+  D M H+ T       AS    L      V  N DL      +D+ I K+
Sbjct: 73  IAAKEEKRQRHDVMAHIYTYGLAAPAASGIIHLGATSCFVTDNADLIFLRSAMDLLIPKL 132

Query: 67  TELDKKVLQWAIDLTEKNMKTL 88
             +  ++ QW+  L  K++ TL
Sbjct: 133 VNVINRLSQWS--LRYKDIPTL 152


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 68  ELDKKVLQWAIDLTEKNMKTLYETCAWGWNPNRKLEEMTDDAAWYLIAREKNGTLLA 124
           E +++  Q  +    K + +L + C       RK EE+    A+ +  RE+N TL A
Sbjct: 189 ERERETFQNQVSQMSKQLDSLEKLC------ERKDEEIRSSQAFNMTLREENDTLAA 239


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 2   GKKSITATNKQKDKRLARKQEQRRIADAMTHVTTANKLQDLASL 45
           G  S+   +   D +   KQ QR++   ++   + N L+D  +L
Sbjct: 88  GSNSVNGASHDLDSKDVDKQHQRKMFPGLSIPNSTNNLRDRPAL 131


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 20/78 (25%), Positives = 33/78 (42%)

Query: 5   SITATNKQKDKRLARKQEQRRIADAMTHVTTANKLQDLASLCKELLVFRNLDLEVDMYIQ 64
           S T  +  KD R  +  E R+  + +   T  ++L  LAS   E +V     L+ +    
Sbjct: 375 SNTLDDLNKDMRFHKLSEVRQHVNTLKEATKDDELAALASRVIEKIVDSGPILDKEELQT 434

Query: 65  KVTELDKKVLQWAIDLTE 82
           K   L K++ +     TE
Sbjct: 435 KFDTLSKEIYKTCFLTTE 452


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 52  FRNLDLEVDMYIQKVTELDKKVLQWAIDLTEKNMKTLYETC 92
           FR+ DL+++  + KV E   K+  + +   E N   L   C
Sbjct: 124 FRHRDLKLENILIKVNEQQIKIADFGMATVEPNDSCLENYC 164


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 42  LASLCKELLVFRNLDLEVDMYIQKVTELDKKVLQWAIDLTEKNMKTLYETCAW--GWNPN 99
           +A  C+   V + L  E + +I    E+ + + +   DLT +   T YE C +     P 
Sbjct: 592 IAQKCRRHFVAQQLG-ETEPFIN---EIIRNLAKTTEDLTPQQTHTFYEACGYMISAQPQ 647

Query: 100 RKLEE 104
           + L+E
Sbjct: 648 KHLQE 652


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.132    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,175
Number of Sequences: 5004
Number of extensions: 24456
Number of successful extensions: 90
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 11
length of query: 141
length of database: 2,362,478
effective HSP length: 66
effective length of query: 75
effective length of database: 2,032,214
effective search space: 152416050
effective search space used: 152416050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)