Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005152-TA|BGIBMGA005152-PA|undefined
(141 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0006 + 10118766-10118775,10119383-10119526,10120534-101206... 29 1.1
08_02_0459 + 17420156-17420976,17422291-17424199 29 1.4
01_02_0010 + 10142450-10142570,10142811-10142965,10143295-101434... 29 1.4
09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852 29 1.9
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315... 29 1.9
08_01_0198 + 1625893-1626795 28 3.3
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411... 27 4.3
01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309 27 5.7
01_02_0011 + 10146944-10147067,10147871-10148025,10148137-101483... 27 7.5
>01_02_0006 +
10118766-10118775,10119383-10119526,10120534-10120659,
10120885-10121003,10121355-10121609
Length = 217
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 80 LTEKNMKTLYETCAWGWNPNRKLEEMTDDAAWYLIAREKNGTLLAFSH 127
+ EK+ WG NP + L ++TDD ++ N + LA +H
Sbjct: 121 VVEKHGMVAAGALVWGGNPAKFLRKLTDDEITFIKESASNYSTLAKAH 168
>08_02_0459 + 17420156-17420976,17422291-17424199
Length = 909
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 24 RRIADAMTHVTTANKLQDLASLCKELLVFRNLDLEVDMYIQKVTELDKKVLQWAIDLTEK 83
R IA+ H +N L + +C LV RNL L+++ + VL + I +++K
Sbjct: 449 RWIAEGFIHKEDSNTLYESGEMCFNELVNRNL-LQLEKQNYNGCRVHDTVLDFIISMSKK 507
Query: 84 N 84
N
Sbjct: 508 N 508
>01_02_0010 +
10142450-10142570,10142811-10142965,10143295-10143477,
10143691-10144043,10144220-10144388
Length = 326
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/94 (22%), Positives = 39/94 (41%)
Query: 18 ARKQEQRRIADAMTHVTTANKLQDLASLCKELLVFRNLDLEVDMYIQKVTELDKKVLQWA 77
A ++ +RR++ V N L+ +LC + + + + E K V+ A
Sbjct: 50 ALERAKRRLSLHRADVLDCNSLRAAFNLCDGVFHVASPVSDDPELLPTAIEGTKNVINAA 109
Query: 78 IDLTEKNMKTLYETCAWGWNPNRKLEEMTDDAAW 111
D+ K + A NPNR+ ++ D+ W
Sbjct: 110 ADMGIKRVVFTSSYGAAHMNPNRRSDQTLDETCW 143
>09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852
Length = 506
Score = 28.7 bits (61), Expect = 1.9
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 10 NKQKDKRLARKQEQRRIADAMTHVTTANKLQDLASLCKELLVFRNLDLE------VDMYI 63
+++K K ARK+ + +A A LQD+ +LLV D+E + YI
Sbjct: 74 HEEKLKAQARKEADKFWTEAAGAANKAQALQDMKEWYMQLLVNHAFDIEGIPERIKEAYI 133
Query: 64 QKVTELDKKVLQWAIDLTEK----NMKTLYETCAWGWNPNRKLEEMTD 107
+++ +LD + L + + +K N +T AW + +++ M D
Sbjct: 134 REI-KLDDEELMFKNHVEKKFGICNHETRLRVRAWEESQQFRIKTMAD 180
>04_04_1397 -
33230416-33230742,33230852-33231007,33231130-33231543,
33234177-33234307,33235076-33235202,33235709-33236209,
33237624-33237935,33238690-33238719
Length = 665
Score = 28.7 bits (61), Expect = 1.9
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 18 ARKQEQRRIADAMTHVTTANKLQDLASLCKELLVFRNLDLEVDMYIQKVTELDKKVLQWA 77
AR ++R+IA+ TH T +L+ C E + RN+ + Q L++K+L+ A
Sbjct: 3 ARGSKKRKIAEGRTH-WTEEELRVFLHSCLEEIQARNI-ISSSPEAQGYINLERKMLERA 60
Query: 78 -IDLTEKNMKTLYETCAWGWNPNRK 101
+T+K +K W W +RK
Sbjct: 61 GKRVTKKQVK-------WRWAKSRK 78
>08_01_0198 + 1625893-1626795
Length = 300
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 96 WNPNRKLEEMTDDAAWYLIAREKNGTLLAFSHFR-FDLDFGEPVLYW 141
++P +E+TDD A +++ K+ T A FR D GE V ++
Sbjct: 53 YHPEGDADEVTDDVAVFVVLVTKDATAWAHVEFRLLDQAAGEMVTFF 99
>03_05_0487 +
24838620-24838967,24840526-24840747,24840819-24841109,
24841316-24841513,24841641-24841705,24841788-24841874,
24841988-24842108,24842200-24842244,24842321-24842458,
24842571-24842643,24842723-24842799,24842882-24842989,
24843108-24843224,24843524-24843679,24843780-24843881,
24844036-24844161,24844237-24844314,24844390-24844485,
24844592-24844707,24844781-24844850,24844930-24844983,
24845062-24845205,24845297-24845596,24845780-24846202,
24846316-24846429
Length = 1222
Score = 27.5 bits (58), Expect = 4.3
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 24 RRIADAMTHVTTANKLQDLAS-LCKEL--LVFRNLDLEVDMYIQKVTELDKKV-LQWAID 79
RR D H NK DLA L L ++FR L +V Y+QK + K+V LQ+AI
Sbjct: 417 RRAEDDRDHY--GNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIK 474
Query: 80 LTEKNMKTLYETCAWGW 96
Y W
Sbjct: 475 AKTITSGLKYSLATGNW 491
>01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309
Length = 330
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 90 ETCAWGWNPNRKLEEMTDDAAWYLIAREKNGTLLAFSHFRFDLDF 134
+T GW N EE D W + ++ T+ F R ++ F
Sbjct: 286 KTAMTGWEGNISAEEGADTGVWLALVPQEQATIGKFFAERREISF 330
>01_02_0011 +
10146944-10147067,10147871-10148025,10148137-10148319,
10149448-10149800,10150036-10150207
Length = 328
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 71 KKVLQWAIDLTEKNMKTLYETCAWGWNPNRKLEEMTDDAAW 111
K V+ A D+ K + A NPNR+ +++ D++ W
Sbjct: 104 KNVINAAADMGVKRVVFTSSYGAVHMNPNRRSDQIVDESCW 144
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.132 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,746,078
Number of Sequences: 37544
Number of extensions: 134462
Number of successful extensions: 345
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 9
length of query: 141
length of database: 14,793,348
effective HSP length: 75
effective length of query: 66
effective length of database: 11,977,548
effective search space: 790518168
effective search space used: 790518168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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