Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005151-TA|BGIBMGA005151-PA|IPR001208|MCM,
IPR008994|Nucleic acid-binding, OB-fold, IPR008048|MCM protein 5
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 496 e-141
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 291 3e-79
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 287 3e-78
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 282 1e-76
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 277 5e-75
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 229 1e-60
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 28 4.9
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 27 6.4
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 496 bits (1224), Expect = e-141
Identities = 258/505 (51%), Positives = 341/505 (67%), Gaps = 13/505 (2%)
Query: 32 KKKFKEFMRQFHTGNFNYKYRDALKRNYNLNQYWVEINIEDLSSFDDVLAEKLYKKPTEH 91
+K F +F+ +F N ++ YR L+ N + QY + I++ L S+++ LA L +PT+
Sbjct: 31 EKNFIQFIEEFVIDN-DFIYRTQLRDNLVVKQYMLNIDLRHLISYNEDLAHLLLSQPTDI 89
Query: 92 LPIXXXXXXXXXXXXXXPRPEGEE-KVEDIQVLLSSDAHSSNLRELKSETVSRLVKIPGI 150
LP+ E + QV L DA+ +R L + +S+LV++PGI
Sbjct: 90 LPLFESAVTTVAKRLLYRSQENASTNIPTCQVTLRYDANILPIRNLTASHISKLVRVPGI 149
Query: 151 VISASGIKAKATKISIQCRSCRNVIPNLPVKPGLEGYVMPRKCNTEQ-SGRPK-CPLDPY 208
+I AS + +AT + + CR+CR L + G G +PR C G K CP+DP+
Sbjct: 150 IIGASTLSCRATALHLVCRNCR-ATRILQISGGFSGVQLPRVCEAPVLDGEKKDCPMDPF 208
Query: 209 FIIPDKCKCIDYQVLKLQEAPESIPQGEMPRHLTVYCDRTLCERVAPGARVTVLGIYSIK 268
I K ID QVLKLQEAP+ +P GE+PRH+ + DR L ++ PG R + GI+SI
Sbjct: 209 IIDHSKSTFIDQQVLKLQEAPDMVPVGELPRHILLNADRYLTNQITPGTRCVITGIFSIF 268
Query: 269 KIAKVGREGRDKGSVGVRSSYLRAVGLTAEEGVTSGLRP-FTAEEEEQFRRLAASPDIYE 327
+ V + G+V +R+ Y+R VG+ + S P F+ EEEE+F ++ +P++Y+
Sbjct: 269 QNKSV----KASGAVAIRNPYIRVVGIQMDSNDGSKSTPLFSEEEEEEFLEISRTPNLYD 324
Query: 328 RIGKSIAPSVFGAVDMKKAIACLLFGGSRKRLPDGLTRRGDINILLLGDPGTAKSQLLKF 387
I SI+P+++G VD+KKAIACLLF GS+K LPDG+ RGDIN+LLLGDPGTAKSQ LKF
Sbjct: 325 IISNSISPAIYGNVDIKKAIACLLFSGSKKILPDGMRLRGDINVLLLGDPGTAKSQFLKF 384
Query: 388 VEKVAPIGVYTSGKGSSAAGLTASVIRDPGSRNFVMEGGAMVLADGGVVCIDEFDKMRED 447
VE++API VYTSGKGSSAAGLTAS+ RD +R F +EGGAMVLADGG+VCIDEFDKMR++
Sbjct: 385 VERLAPIAVYTSGKGSSAAGLTASIQRDSVTREFYLEGGAMVLADGGIVCIDEFDKMRDE 444
Query: 448 DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKA-DDNIDFMPTILS 506
DRVAIHEAMEQQTISIAKAGITT LNSR SVLAAAN +FGR+DD K +NIDF TILS
Sbjct: 445 DRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDMKTPGENIDFQSTILS 504
Query: 507 RFDMIFIVKDEHDQNRD--IARYVL 529
RFDMIFIVKDEHD+ +D IAR+V+
Sbjct: 505 RFDMIFIVKDEHDETKDRNIARHVI 529
Score = 96.3 bits (229), Expect = 1e-20
Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 10/150 (6%)
Query: 525 ARYVLMRTGALQHERQADKRLSIPITVRQLEAIVRISESLAKMQLQPFATEAHVNEALRL 584
+++V +R Q E+ ++ R +IPITVRQLEAI+RI+ESLAKM L P A+EAH EA+RL
Sbjct: 577 SQFVAIRKRVHQSEQDSNSRSTIPITVRQLEAIIRITESLAKMSLSPIASEAHATEAIRL 636
Query: 585 FQVSTLDAAMTGSLAGAEGFTTEEDHEMLTRVEKQLKRRFAVGSQVSEQTIIQDFLR-QK 643
F STL AA S E E + ++E L++R +G Q S + +I++++
Sbjct: 637 FLTSTLAAATQSS---------PEVTEEVKKIEASLRKRLPIGFQASYRMLIREYVNGHG 687
Query: 644 YPERAILKVIHMMIRRGELQHRLQRKMLYR 673
Y + A+ + ++ + +Q R + +YR
Sbjct: 688 YSQHALEMALQILSSKETIQLRNGGQTVYR 717
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 291 bits (713), Expect = 3e-79
Identities = 176/490 (35%), Positives = 264/490 (53%), Gaps = 13/490 (2%)
Query: 29 QAVKKKFKEFMRQFHTGNFNYKYRDALKRNYNLNQYWVEINIEDLSSFDDVLAEKLYKKP 88
+ + ++FK F+ ++ N Y + ++ +N + +N L +LA L P
Sbjct: 198 RTIAREFKNFLLEYTDENGTSVYGNRIRTLGEVNAESLMVNYAHLGESKPILAYFLANAP 257
Query: 89 TEHLPIXXXXXXXXXXXXXXPRPEGEEKVEDIQVLLSSDAHSSNLRELKSETVSRLVKIP 148
PI P+ E DI V +++ LR+L+ ++ LV++
Sbjct: 258 A---PIFRIFDRVALEATLLHYPDYERIHSDIHVRITNLPTCFTLRDLRQSHLNCLVRVS 314
Query: 149 GIVISASGIKAKATKISIQCRSCRNVIPNLPVKPGLEGYVMPRKCNTEQSGRPKCPLDPY 208
G+V +G+ + I C C + +E V C+ S P+
Sbjct: 315 GVVTRRTGLFPQLKYIRFTCTKCGATLGPFFQDSSVE--VKISFCHNCSSR------GPF 366
Query: 209 FIIPDKCKCIDYQVLKLQEAPESIPQGEMPRHLTVYCDRTLCERVAPGARVTVLGIYSIK 268
I ++ +YQ + LQE+P ++P G +PRH V L + PG + V GIY
Sbjct: 367 VINSERTVYNNYQRITLQESPGTVPSGRLPRHREVILLADLVDVAKPGEEIDVTGIYRNN 426
Query: 269 KIAKVG-REGRDKGSVGVRSSYLRAVGLTAEEGVTSGLRPFTAEEEEQFRRLAASPDIYE 327
A + + G + + ++++ + + L T +EE + R LA SPDI+
Sbjct: 427 FDASLNTKNGFPVFATIIEANHISQLDGSGNTDDDFSLSRLTDDEEREIRALAKSPDIHN 486
Query: 328 RIGKSIAPSVFGAVDMKKAIACLLFGGSRKRLPDGLTRRGDINILLLGDPGTAKSQLLKF 387
RI S+APS++G +K AIA LFGG K + RGDIN+LLLGDPGTAKSQ LK+
Sbjct: 487 RIIASMAPSIYGHRSIKTAIAAALFGGVPKNINGKHKIRGDINVLLLGDPGTAKSQFLKY 546
Query: 388 VEKVAPIGVYTSGKGSSAAGLTASVIRDPGSRNFVMEGGAMVLADGGVVCIDEFDKMRED 447
VEK A V+ +G+G+SA GLTASV +DP + + +EGGA+VLAD GV IDEFDKM +
Sbjct: 547 VEKTAHRAVFATGQGASAVGLTASVRKDPITNEWTLEGGALVLADKGVCLIDEFDKMNDQ 606
Query: 448 DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDT-KADDNIDFMPTILS 506
DR +IHEAMEQQ+ISI+KAGI TTL +RC+++AAAN + GR++ T + N++ ILS
Sbjct: 607 DRTSIHEAMEQQSISISKAGIVTTLQARCTIIAAANPIGGRYNTTIPFNQNVELTEPILS 666
Query: 507 RFDMIFIVKD 516
RFD++ +VKD
Sbjct: 667 RFDILQVVKD 676
Score = 47.2 bits (107), Expect = 7e-06
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 546 SIPITVRQLEAIVRISESLAKMQLQPFATEAHVNEALRLFQVSTLDA 592
S PITVR LE+ +R+SE+ AKMQL F +H+++A+++ S ++A
Sbjct: 766 SYPITVRHLESAIRLSEAFAKMQLSEFVRPSHIDKAIQVIIDSFVNA 812
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 287 bits (704), Expect = 3e-78
Identities = 175/495 (35%), Positives = 267/495 (53%), Gaps = 8/495 (1%)
Query: 35 FKEFMRQFHTGNFNYK-YRDALKRNYNLNQYWVEINIEDLSSFDDVLAEKLYKKPTEHLP 93
F+E++ + T + N Y++A+ R N+ Q + +NI++L ++ LA+ + KP E++
Sbjct: 17 FQEYL-EHDTDDANVTLYQEAILRMLNMGQRRLIVNIDELRDYNRELADGVLLKPLEYVE 75
Query: 94 IXXXXXXXXXXXXXXP--RPEGEEKVEDIQVLLSSDAHSSNLRELKSETVSRLVKIPGIV 151
P + ++K+ + S H N R L++ +++++ + GIV
Sbjct: 76 PFDEALRNVVSTLIDPVVHKDLKDKLFYVGFRGSFGDHHVNPRTLRAMHLNKMISLEGIV 135
Query: 152 ISASGIKAKATKISIQCRSCRNVIPNLPVKPGLEGYVMPRKCNTEQSGRPKCPLDPYFII 211
S ++ K K C + + + G + + PL F
Sbjct: 136 TRCSFVRPKVIKSVHYCEATKRHHFKQYADATMNGGLSFQSTVYPTQDENGNPLSIEFGF 195
Query: 212 PDKCKCIDYQVLKLQEAPESIPQGEMPRHLTVYCDRTLCERVAPGARVTVLGIYSIKKIA 271
D+Q + LQE PE P G++PR + + D L + V PG RV ++G Y
Sbjct: 196 ST---FRDHQSISLQEMPERAPPGQLPRSIDILLDDDLVDTVKPGDRVNIVGQYRSMGSK 252
Query: 272 KVGREGRDKGSVGVRSSYLRAVGLTAEEGVTSGLRPFTAEEEEQFRRLAASPDIYERIGK 331
G +V + ++ + V G T + +LA +++E +
Sbjct: 253 TSGNTSATFRTVLLANNVVLLGNKPGLGNVGGGALDITDADIRNINKLARKKNVFELLST 312
Query: 332 SIAPSVFGAVDMKKAIACLLFGGSRKRLPDGLTRRGDINILLLGDPGTAKSQLLKFVEKV 391
S+APS++G +K+AI LL GG+ K L +G RGDINIL++GDP TAKSQLL+FV
Sbjct: 313 SLAPSIYGYEYVKQAILLLLLGGTEKNLTNGTHIRGDINILMVGDPSTAKSQLLRFVLNT 372
Query: 392 APIGVYTSGKGSSAAGLTASVIRDPGSRNFVMEGGAMVLADGGVVCIDEFDKMREDDRVA 451
AP+ + T+G+GSS GLTA+V D + +E GAMVLAD GVVCIDEFDKM + DRVA
Sbjct: 373 APLAIATTGRGSSGVGLTAAVTTDKETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVA 432
Query: 452 IHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTK-ADDNIDFMPTILSRFDM 510
IHE MEQQT++IAKAGI T+LN+RCSV+AAAN ++G++D K NI ++LSRFD+
Sbjct: 433 IHEVMEQQTVTIAKAGIHTSLNARCSVIAAANPIYGQYDIRKDPHQNIALPDSMLSRFDL 492
Query: 511 IFIVKDEHDQNRDIA 525
+FIV D+ D +D A
Sbjct: 493 LFIVTDDIDDKKDRA 507
Score = 31.5 bits (68), Expect = 0.40
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 521 NRDIARYVL-MRTGALQHERQADKRLSIPITVRQLEAIVRISESLAKMQL 569
N+ A Y+ + G + Q ++R + P+T R LE ++R+S + AK +L
Sbjct: 601 NQATAEYITNIYCGLRNDDLQGNQRRTSPLTARTLETLIRLSTAHAKARL 650
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 282 bits (691), Expect = 1e-76
Identities = 161/394 (40%), Positives = 229/394 (58%), Gaps = 12/394 (3%)
Query: 132 NLRELKSETVSRLVKIPGIVISASGIKAKATKISIQCRSCR-NVIPNLPVKPGLEGYVMP 190
++R+L+ E + L+ + GIV S +K T + C C V + K ++
Sbjct: 169 SVRDLRGENLGSLLTVRGIVTRTSDVKPSLTVNAYTCDRCGYEVFQEIRQKT----FLPM 224
Query: 191 RKCNTEQSGRPKCPLDPYFIIPDKCKCIDYQVLKLQEAPESIPQGEMPRHLTVYCDRTLC 250
+C +++ + F+ K + +Q +K+QE +P G +PR LTV+ +
Sbjct: 225 SECPSDECKKNDAK-GQLFMSTRASKFLPFQEVKIQELTNQVPIGHIPRSLTVHLYGAIT 283
Query: 251 ERVAPGARVTVLGIYSIKKIAKVGREGRDKGSVGVRSSYLRAVGLTAEEGVTSGLRPFTA 310
V PG V + GI+ G G + +YL ++ + + T
Sbjct: 284 RSVNPGDIVDISGIFL--PTPYTGFRAMRAGLL--TDTYLECHYVSQIIKNYTNIEK-TP 338
Query: 311 EEEEQFRRLAASPDIYERIGKSIAPSVFGAVDMKKAIACLLFGGSRKRLPDGLTRRGDIN 370
+ E L ++YE++ KSIAP ++G D+KKA+ LL GG K L DG+ RGDIN
Sbjct: 339 QSEAAIAELNQGGNVYEKLAKSIAPEIYGHEDVKKALLLLLVGGVTKELGDGMRIRGDIN 398
Query: 371 ILLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSAAGLTASVIRDPGSRNFVMEGGAMVL 430
I L GDPG AKSQLLK++ KVAP GVYT+G+GSS GLTA+V+RDP + V+EGGA+VL
Sbjct: 399 ICLTGDPGVAKSQLLKYISKVAPRGVYTTGRGSSGVGLTAAVMRDPVTDEMVLEGGALVL 458
Query: 431 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWD 490
AD G+ CIDEFDKM E DR AIHE MEQQTISI+KAGITTTLN+R S+LAAAN ++GR++
Sbjct: 459 ADNGICCIDEFDKMDESDRTAIHEVMEQQTISISKAGITTTLNARTSILAAANPLYGRYN 518
Query: 491 DTKAD-DNIDFMPTILSRFDMIFIVKDEHDQNRD 523
A NI+ +LSRFD++F++ D + D
Sbjct: 519 PKVAPIHNINLPAALLSRFDILFLILDTPSRETD 552
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 277 bits (678), Expect = 5e-75
Identities = 177/549 (32%), Positives = 288/549 (52%), Gaps = 38/549 (6%)
Query: 5 DDPGVFFSDNFGVEENESQDHVNLQAVKKKFK-EFMRQFHT--GNFNYKYRDALKRNYNL 61
D V + N ++E+ + L+ KKK++ E+ + Y +AL+ +
Sbjct: 154 DTVRVIWGTNVSIQESIASFRGFLRGFKKKYRPEYRNELMPPPDAEQLVYIEALRNMRIM 213
Query: 62 NQYWVEINIEDLSSFDDV--LAEKLYKKPTEHLPIXXXXXXXXXXXXXXPRPEGEEKVED 119
+ ++++DL + L +LY P E +PI P E+ + D
Sbjct: 214 GLEILNLDVQDLKHYPPTKKLYHQLYSYPQEIIPIMDQTIKDVMLDLLGTNPP-EDVLND 272
Query: 120 IQVLLSSDAHSS-----NLRELKSETVSRLVKIPGIVISASGIKAKATKISIQCRSCRNV 174
I++ + + N+R+L + +L+ I G+V+ + + + +C C +
Sbjct: 273 IELKIYKIRPFNLEKCINMRDLNPGDIDKLISIKGLVLRCTPVIPDMKQAFFRCSVCGHC 332
Query: 175 IPNLPVKPGLEGYVMPRKCNTEQSGRPKCPLDPYFIIPDKCKCIDYQVLKLQEAPESIPQ 234
+ + + G P KC E G +I ++ + D QV+KLQE P+ +P
Sbjct: 333 V-TVEIDRGR--IAEPIKCPREVCGATNAMQ----LIHNRSEFADKQVIKLQETPDVVPD 385
Query: 235 GEMPRHLTVYCDRTLCERVAPGARVTVLGIY------------SIKKIAK-----VGREG 277
G+ P +++ L + G R+ V GI+ ++K + K V +
Sbjct: 386 GQTPHSVSLCVYDELVDSARAGDRIEVTGIFRCVPVRLNPRMRTVKSLFKTYVDVVHIKK 445
Query: 278 RDKGSVGVRSSYLRAVGLTAEEGVTSGLRPFTAEEEEQFRRLAASPDIYERIGKSIAPSV 337
+DK +G S L + +R + EE E+ ++++ DIY+ + +S+APS+
Sbjct: 446 QDKRRLGTDPSTLESDIAEDAALQIDEVRKISDEEVEKIQQVSKRDDIYDILSRSLAPSI 505
Query: 338 FGAVDMKKAIACLLFGGSRKRLPDGLTRR--GDINILLLGDPGTAKSQLLKFVEKVAPIG 395
+ D+KK + LFGG+ K G + R GDINIL+ GDP T+KSQ+LK+V K+AP G
Sbjct: 506 YEMDDVKKGLLLQLFGGTNKSFHKGASPRYRGDINILMCGDPSTSKSQILKYVHKIAPRG 565
Query: 396 VYTSGKGSSAAGLTASVIRDPGSRNFVMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEA 455
VYTSGKGSSA GLTA + RD ++ V+E GA+VL+DGG+ CIDEFDKM + R +HE
Sbjct: 566 VYTSGKGSSAVGLTAYITRDQDTKQLVLESGALVLSDGGICCIDEFDKMSDATRSILHEV 625
Query: 456 MEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWD-DTKADDNIDFMPTILSRFDMIFIV 514
MEQQT+++AKAGI TTLN+R S+LA+AN + +++ D NID PT+LSRFD+++++
Sbjct: 626 MEQQTVTVAKAGIITTLNARTSILASANPIGSKYNPDLPVTKNIDLPPTLLSRFDLVYLI 685
Query: 515 KDEHDQNRD 523
D D+ D
Sbjct: 686 LDRVDETLD 694
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 539 RQADKRLSIPITVRQLEAIVRISESLAKMQLQPFATEAHVNEALRLFQVSTLDAA 593
R ++KR++ T RQLE+++R+SE+ AKM L+ V EA RL + + D A
Sbjct: 762 RASEKRITA--TTRQLESMIRLSEAHAKMHLRNVVEVGDVLEAARLIKTAIKDYA 814
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 229 bits (559), Expect = 1e-60
Identities = 119/241 (49%), Positives = 165/241 (68%), Gaps = 7/241 (2%)
Query: 305 LRPFTAEEEEQFRRLAASPDIYERIGKSIAPSVFGAVDMKKAIACLLFGGSRKRLPDGLT 364
L+ + EE + R + S IY R+ S+APSV+G +KK I L GG K P+G+
Sbjct: 406 LQSLSQEEIDDLRAMVHSDHIYSRLTNSLAPSVYGHEIIKKGILLQLMGGVHKLTPEGIN 465
Query: 365 RRGDINILLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSAAGLTASVIRDPGSRNFVME 424
RGD+NI ++GDP T+KSQ LK+V P +YTSGK SSAAGLTA+V++D + +F +E
Sbjct: 466 LRGDLNICIVGDPSTSKSQFLKYVCNFLPRAIYTSGKASSAAGLTAAVVKDEETGDFTIE 525
Query: 425 GGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANS 484
GA++LAD G+ IDEFDKM D+VAIHEAMEQQTISIAKAGI TLN+R S+LAAAN
Sbjct: 526 AGALMLADNGICAIDEFDKMDLSDQVAIHEAMEQQTISIAKAGIQATLNARTSILAAANP 585
Query: 485 VFGRWD-DTKADDNIDFMPTILSRFDMIFIVKDEHDQ--NRDIARYVL----MRTGALQH 537
+ GR++ T +NI+ I+SRFD+ F+V DE ++ +R +A++++ +R A+Q
Sbjct: 586 IGGRYNRKTTLRNNINMSAPIMSRFDLFFVVLDECNESVDRHLAKHIVDIHRLRDDAMQP 645
Query: 538 E 538
E
Sbjct: 646 E 646
Score = 55.2 bits (127), Expect = 3e-08
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 131 SNLRELKSETVSRLVKIPGIVISASGIKAKATKISIQCRSCRNVIPNLPVKPGLEGYVMP 190
S +R+L+++ + RL I G V S ++ + + + C C V+ N V+ Y P
Sbjct: 196 STIRDLRTDRIGRLTTITGTVTRTSEVRPELAQGTFICEECHTVVSN--VEQAFR-YTEP 252
Query: 191 RKCNTEQSGRPKCPLDPYFIIPDKCKCIDYQVLKLQEAPESIPQGEMPRHLTVYCDRTLC 250
+C E + + + + D+Q +++QE IP G MPR L V +
Sbjct: 253 TQCPNELCANKRS----WRLNISQSSFQDWQKVRIQENSNEIPTGSMPRTLDVILRGDIV 308
Query: 251 ERVAPGARVTVLGI-YSIKKIAKVGREG 277
ER G + GI ++ ++++G G
Sbjct: 309 ERAKAGDKCAFTGILIAVPDVSQLGIPG 336
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 538 ERQADKRLSIPITVRQLEAIVRISESLAKMQLQPFATEAHVNEALRLFQVSTL 590
+ Q + S ITVRQLE+++R+SE++A+ T A VNEA L + S +
Sbjct: 685 DAQGAGKNSYRITVRQLESMIRLSEAIARANCVDDITPAFVNEAYSLLRQSII 737
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 27.9 bits (59), Expect = 4.9
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 146 KIPGIVISASGIKAKATKISIQCRSCRNVI 175
++P V A ++A+A ++ ++C+ CR V+
Sbjct: 212 RVPSEVAYAETVRARAGQLELRCKKCRFVL 241
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 251 ERVAPGARVTVLGIYSIKKIAKVGREGR 278
ER+AP G YS+K++A+ +EGR
Sbjct: 287 ERLAPKGWKITEGKYSMKEVAQASKEGR 314
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.136 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,547
Number of Sequences: 5004
Number of extensions: 117057
Number of successful extensions: 346
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 18
length of query: 675
length of database: 2,362,478
effective HSP length: 77
effective length of query: 598
effective length of database: 1,977,170
effective search space: 1182347660
effective search space used: 1182347660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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