Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005151-TA|BGIBMGA005151-PA|IPR001208|MCM,
IPR008994|Nucleic acid-binding, OB-fold, IPR008048|MCM protein 5
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1080 - 33955034-33955117,33955199-33955300,33955381-339555... 464 e-130
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892... 292 5e-79
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578... 285 1e-76
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888... 283 3e-76
05_05_0208 + 23275931-23275996,23276084-23276196,23276279-232764... 256 4e-68
05_03_0079 + 8212648-8212724,8212844-8212993,8213211-8213351,821... 242 6e-64
06_01_0809 - 6100025-6100251,6100456-6100565,6100919-6100986,610... 210 4e-54
05_05_0138 + 22644263-22644460,22644617-22644711,22645786-226459... 151 1e-36
05_01_0516 + 4354494-4354575,4354621-4354832 64 5e-10
06_03_1386 + 29816744-29816941,29817030-29817330,29817421-298175... 36 0.11
01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513... 33 0.74
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 32 1.7
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 31 3.0
09_04_0398 + 17278163-17278480 31 4.0
09_03_0142 - 12718888-12719724,12719767-12720369 31 4.0
02_02_0371 - 9513742-9514293,9514784-9514923,9515217-9515556,951... 31 4.0
02_01_0628 + 4717963-4718175,4718719-4718857,4719514-4719740,471... 31 4.0
04_01_0152 - 1757244-1757369,1758675-1758926,1759594-1759665,176... 29 9.1
02_05_0693 - 30977323-30977421,30977783-30977843,30978874-309789... 29 9.1
>02_05_1080 -
33955034-33955117,33955199-33955300,33955381-33955510,
33955674-33955783,33955827-33955950,33956042-33956136,
33956205-33956300,33956419-33956551,33956668-33956759,
33956844-33956948,33957201-33957335,33957421-33957526,
33957621-33957748,33957860-33957958,33958049-33958228,
33958303-33958446,33958533-33958647,33958739-33958905
Length = 714
Score = 464 bits (1144), Expect = e-130
Identities = 262/558 (46%), Positives = 349/558 (62%), Gaps = 52/558 (9%)
Query: 1 MEGFDDPGVFFSDNF----GVEENESQDHVNLQAVKKKFKEFMRQFHTGNFNYKYRDALK 56
M G+D+ VF+SD G + + + +KFKEF+R F ++ YR++L
Sbjct: 1 MSGWDEGAVFYSDQAQFPRGGPGGDPSADLTRHSALRKFKEFLRGFTGPTGDFPYRESLV 60
Query: 57 RNYNLNQYWVEINIEDLSSFDDVLAEKLYKKPTEHLPIXXXXXXXXXXXXXXP----RPE 112
N + V + IEDL +FD L++K+ K P ++LP+ E
Sbjct: 61 HNRD----HVTVAIEDLDAFDAELSDKIRKSPADYLPLFETAASEVLASLRSKVAGETGE 116
Query: 113 GEEKVE-DIQVLLSSDAHSSNLRELKSETVSRLVKIPGIVISASGIKAKATKISIQCRSC 171
EE D+Q+ LSS + ++R + ++ +S+LVKI GI I+AS +KAKAT +++ C++C
Sbjct: 117 MEEPATGDVQIFLSSKENCLSMRSIGADYMSKLVKIAGITIAASRVKAKATHVTLLCKNC 176
Query: 172 RNVIPNLPVKPGLEGYVMPRKCN-TEQSGRPKCPLDPYFIIPDKCKCIDYQVLKLQEAPE 230
R+V +P +PGL G ++PR C+ Q G CPLDP+ +PDK K +D Q LKLQE PE
Sbjct: 177 RSV-KTVPCRPGLGGAIVPRSCDHVPQPGEEPCPLDPWIAVPDKSKYVDLQTLKLQENPE 235
Query: 231 SIPQGEMPRHLTVYCDRTLCERVAPGARVTVLGIYSIKKIAKVGREGRDKGSVGVRSSYL 290
+P GE+PR++ + DR L + + PG R+TV+GIYS+ + + KG+VGV+ Y+
Sbjct: 236 DVPTGELPRNMLLSVDRHLVQTIVPGTRLTVIGIYSVYQAS-----ANQKGAVGVKQPYI 290
Query: 291 RAVGL-TAEEGVTSGLRPFTAEEEEQFRRLAASPDIYERIGKSIAPSVFGAVDMKKAIAC 349
R VGL + + ++G FT +EE +F+ A PD Y +I I PS++G D+KKAIAC
Sbjct: 291 RVVGLEQSRDANSNGPSNFTLDEEMEFKEFAQRPDAYVKICSMIGPSIYGHSDVKKAIAC 350
Query: 350 LLFGGSRKRLPDGLTRRGDINILLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSAAGLT 409
LLFGGS+K LKFVEK API VYTSGKGSSAAGLT
Sbjct: 351 LLFGGSKK--------------------------FLKFVEKTAPIAVYTSGKGSSAAGLT 384
Query: 410 ASVIRDPGSRNFVMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGIT 469
ASVIRD SR F +EGGAMVLADGGVVCIDEFDKMR +DRVAIHEAMEQQTISIAKAGIT
Sbjct: 385 ASVIRDGSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGIT 444
Query: 470 TTLNSRCSVLAAANSVFGRWDDTK-ADDNIDFMPTILSRFDMIFIVKD--EHDQNRDIAR 526
T LNSR SVLAAAN + GR+DD K A DNID TILSRFD+IFIVKD +DQ++ IA
Sbjct: 445 TVLNSRTSVLAAANPIAGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYDQDKRIAS 504
Query: 527 YVLM--RTGALQHERQAD 542
+++ +GA + D
Sbjct: 505 HIIKVHASGAAASSKNTD 522
Score = 103 bits (247), Expect = 5e-22
Identities = 57/147 (38%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 527 YVLMRTGALQHERQADKRLSIPITVRQLEAIVRISESLAKMQLQPFATEAHVNEALRLFQ 586
+ L T Q + + +IPITVRQLEAI+R+SESLAKM+L AT HV EA RLF
Sbjct: 568 FSLSLTKMRQQAHETGRAAAIPITVRQLEAIIRLSESLAKMRLTSVATPEHVEEAFRLFN 627
Query: 587 VSTLDAAMTGSLAGAEGFTTEEDHEMLTRVEKQLKRRFAVGSQVSEQTIIQDFLRQKYPE 646
VST+DAA +G + + + +E + + E Q+KRR +GS +SE+ +I + R E
Sbjct: 628 VSTVDAARSG-INEHLNLSPDIANE-IKQAEAQIKRRMGIGSHISERRLIDELNRMGMNE 685
Query: 647 RAILKVIHMMIRRGELQHRLQRKMLYR 673
+ + + +M +R E++++ +R ++ R
Sbjct: 686 SIVRRALLIMHQRDEVEYKRERHVIVR 712
>01_05_0265 +
20188160-20188211,20188291-20189019,20189103-20189231,
20189857-20189938,20190034-20190166,20190269-20190340,
20190478-20190573,20190651-20190764,20190838-20191050,
20191144-20191242,20191328-20191488,20191589-20191685,
20191828-20191989,20192068-20192148,20192242-20192320,
20192414-20192550,20192638-20192688,20192776-20192844,
20193583-20193700,20194142-20194197
Length = 909
Score = 292 bits (717), Expect = 5e-79
Identities = 199/597 (33%), Positives = 306/597 (51%), Gaps = 29/597 (4%)
Query: 50 KYRDALKRNYNLNQ-YWVEINIEDLSSFDDVLAEKLYKKPTEHLPIXXXXXXXXXXXXXX 108
KY A+ R L +++N D+ D L K+ + P E L I
Sbjct: 176 KYMRAIHRILELEGGESLDVNAHDVFDHDPDLYGKMVRYPLEVLAIFDIVLMDLVARI-- 233
Query: 109 PRPEGEEKVEDIQVLLSSDAHSSNLRELKSETVSRLVKIPGIVISASGIKAKATKISIQC 168
P E+ ++ L S S LR L + ++V I G++I S + + + +C
Sbjct: 234 -EPLFEKHIQTRIYNLKS---SVCLRNLNPSDIEKMVSIKGMIIRCSSVIPELKEAVFRC 289
Query: 169 RSCRNVIPNLPVKPGLEGYVMPRKCNTEQSGRPKCPLDPYFIIPDKCKCIDYQVLKLQEA 228
C + PV P C EQ + ++ ++C+ D Q++KLQE
Sbjct: 290 LVCG--FYSEPVMVDRGRVTEPHICQKEQCKAT----NSMTLVHNRCRFADKQIIKLQET 343
Query: 229 PESIPQGEMPRHLTVYCDRTLCERVAPGARVTVLGIYSIKKIAKVGREGRDKGSVGVRSS 288
P+ IP+G P ++V L + PG RV + GIY I +VG R S+ ++
Sbjct: 344 PDEIPEGGTPHTVSVLMHDKLVDAGKPGDRVEITGIYRAMSI-RVGPTQRTVKSIFKKTD 402
Query: 289 YLRA-VGLTAEEGVTSGLRP----FTAEEEEQFRRLAASPDIYERIGKSIAPSVFGAVDM 343
R V + E + + F ++ E+ + L+ PDIY+R+ +S+AP+++ D+
Sbjct: 403 KSRLHVEDSMETDNPNANKTTEDDFLRDKVEKLKELSKLPDIYDRLTRSLAPNIWELDDV 462
Query: 344 KKAIACLLFGGSRKRLPDGLTRRGDINILLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGS 403
K+ + C LFGG+ RLP G + RGDINILL+GDPGT+KSQLL+++ K++P G+YTSG+GS
Sbjct: 463 KRGLLCQLFGGNALRLPSGASFRGDINILLVGDPGTSKSQLLQYMHKLSPRGIYTSGRGS 522
Query: 404 SAAGLTASVIRDPGSRNFVMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISI 463
SA GLTA V +DP + V+E GA+VL+D GV CIDEFDKM ++ R +HE MEQQT+SI
Sbjct: 523 SAVGLTAYVTKDPETGETVLESGALVLSDKGVCCIDEFDKMSDNARSMLHEVMEQQTVSI 582
Query: 464 AKAGITTTLNSRCSVLAAANSVFGRWDD-TKADDNIDFMPTILSRFDMIFIVKDEHDQNR 522
AKAGI +LN+R SVLA AN R++ DNI PT+LSRFD+I+++ D+ D+
Sbjct: 583 AKAGIIASLNARTSVLACANPTESRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQT 642
Query: 523 DIARYVLMRTGALQHERQADKRLSIPITVRQLEAIVRISESLAKMQLQPFATEAHVNEAL 582
D R + +L E + L + + + L A + S A+ +QP ++ E
Sbjct: 643 D--RRLAKHIVSLHFENPNIEELEV-LDLPTLVAYI----SYARKHIQPQLSDEAAEELT 695
Query: 583 RLFQVSTLDAAMTGSLAGAEGFTTEEDHEMLTRVEKQLKRRFAVGSQVSEQTIIQDF 639
R + GS T + ++ E + RF+ V Q +++ F
Sbjct: 696 RGYVEMRKRGNSPGSRKKVITATARQIESLIRLSEALARMRFS--EMVEVQDVVEAF 750
Score = 38.3 bits (85), Expect = 0.020
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 547 IPITVRQLEAIVRISESLAKMQLQPFATEAHVNEALRLFQVSTLDAA 593
I T RQ+E+++R+SE+LA+M+ V EA RL +V+ +A
Sbjct: 715 ITATARQIESLIRLSEALARMRFSEMVEVQDVVEAFRLLEVAMQQSA 761
>11_04_0331 +
16456577-16456579,16456664-16456911,16457625-16457812,
16458293-16458489,16458579-16458768,16458865-16459084,
16459169-16459376,16459508-16459642,16459725-16459916,
16459999-16460171,16460266-16460454,16460539-16460655,
16460734-16460818,16460900-16461052,16461135-16461260,
16461391-16461573,16461823-16461984,16462098-16462214
Length = 961
Score = 285 bits (698), Expect = 1e-76
Identities = 164/401 (40%), Positives = 238/401 (59%), Gaps = 18/401 (4%)
Query: 133 LRELKSETVSRLVKIPGIVISASGIKAKATKISIQCRSCRNVIPNLPVKPGLEGYVMPRK 192
+R ++ ++ +++I G+V SG+ + ++ C C V+ P V
Sbjct: 345 IRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSKCGTVLG--PFFQNSYTEVKVGS 402
Query: 193 CNTEQSGRPKCPLD-PYFIIPDKCKCIDYQVLKLQEAPESIPQGEMPRHLTVYCDRTLCE 251
C P+C P+ I ++ +YQ L LQE+P +P G +PR+ V L +
Sbjct: 403 C-------PECQSKGPFTINVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLID 455
Query: 252 RVAPGARVTVLGIYSIKKIAKVGREGRDKGSVGVRSSYLRAVGLTAEEGVTSGLRPFTAE 311
PG + V GIY+ + K V ++ + A + ++ + S + T E
Sbjct: 456 CARPGEEIEVTGIYTNNFDLSLNT----KNGFPVFATVVEANYVAKKQDLFSAYK-LTDE 510
Query: 312 EEEQFRRLAASPDIYERIGKSIAPSVFGAVDMKKAIACLLFGGSRKRLPDGLTRRGDINI 371
++ + +LA P I ERI KSIAPS++G D+K AIA +FGG K + RGDIN+
Sbjct: 511 DKAEIEKLAKDPRIGERIVKSIAPSIYGHEDIKTAIALAMFGGQEKNVKGKHRLRGDINV 570
Query: 372 LLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSAAGLTASVIRDPGSRNFVMEGGAMVLA 431
LLLGDPGTAKSQ LK+VEK VYT+GKG+SA GLTA+V +DP +R + +EGGA+VLA
Sbjct: 571 LLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLA 630
Query: 432 DGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDD 491
D G+ IDEFDKM + DRV+IHEAMEQQ+ISI+KAGI T+L +RCSV+AAAN + GR+D
Sbjct: 631 DRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDS 690
Query: 492 TKA-DDNIDFMPTILSRFDMIFIVKDEHDQNRD--IARYVL 529
+K N++ I+SRFD++ +VKD D D +AR+V+
Sbjct: 691 SKTFTQNVELTDPIISRFDVLCVVKDIVDPFTDEMLARFVV 731
Score = 40.3 bits (90), Expect = 0.005
Identities = 29/137 (21%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 539 RQADKRLSIPITVRQLEAIVRISESLAKMQLQPFATEAHVNEALRLFQVSTLDAAMTGSL 598
R++ +PI VR +E+I+R+SE+ A+M L+ + ++ V+ A+R+ LD+ ++
Sbjct: 805 RESSHGQGVPIAVRHIESIIRMSEAHARMHLRSYVSQEDVDMAIRVL----LDSFISTQK 860
Query: 599 AGAEGFTTEEDHEMLTRVEKQLKRRFAVGSQVSEQTIIQDFLR-QKYPERAILKVIHMMI 657
G + + + +T K+ + + +T+++D L ++ ++ H+ +
Sbjct: 861 FGVQKALQKNFRKYMT-----YKKDYNELLLLLLRTLVKDVLHFEEIVSGPTTRLTHIEV 915
Query: 658 RRGELQHRLQRKMLYRL 674
+ +L+++ Q +Y L
Sbjct: 916 KVEDLKNKAQEYEIYDL 932
>12_02_0768 -
22988119-22988223,22988337-22988558,22988645-22988810,
22989176-22989181,22989281-22989453,22989737-22989928,
22990034-22990211,22990302-22990444,22990666-22990755,
22990869-22990991,22991391-22991568,22992213-22992442,
22992557-22992616,22992731-22992798,22992908-22992953
Length = 659
Score = 283 bits (694), Expect = 3e-76
Identities = 175/458 (38%), Positives = 257/458 (56%), Gaps = 32/458 (6%)
Query: 133 LRELKSETVSRLVKIPGIVISASGIKAKATKISIQCRSCR-NVIPNLPVKPGLEGYVMP- 190
+R++K+ + +LVKI GIV S +K C C + + + + + P
Sbjct: 150 IRQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEECGFEIYQEVTARVFMPLFECPS 209
Query: 191 RKCNTEQSGRPKCPLDPYFIIPDKCKCIDYQVLKLQEAPESIPQGEMPRHLTVYCDRTLC 250
++C ++ K L + K + +Q +KLQE E +P+G +PR LTV+ L
Sbjct: 210 QRCKLNKA---KGNL---ILQLRASKFLKFQEVKLQELAEHVPKGHIPRSLTVHLRGELT 263
Query: 251 ERVAPGARVTVLGIYSIKKIAKVGREGRDKGSVGVRSSYLRAVGLTAEEGVTSGLRPFTA 310
+VAPG V + GI+ + G G V +YL ++ +T +
Sbjct: 264 RKVAPGDVVEMSGIFL--PMPYYGFRAMRAGLVA--DTYLESMSITHFKKKYEEYE-LKG 318
Query: 311 EEEEQFRRLAASPDIYERIGKSIAPSVFGAVDMKKAIACLLFGGSRKRLPDGLTRRGDIN 370
+E+EQ RLA DIY ++ +S+AP +FG D+KKA+ LL G ++L DG+ RGD++
Sbjct: 319 DEQEQIDRLAEDGDIYNKLARSLAPEIFGHEDVKKALLLLLVGAPHRKLTDGMKIRGDLH 378
Query: 371 ILLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSAAGLTASVIRDPGSRNFVMEGGAMVL 430
I L+GDPG AKSQLLK + VAP GVYT+G+GSS GLTA+V +DP + FV+EGGA+VL
Sbjct: 379 ICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEFVLEGGALVL 438
Query: 431 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWD 490
AD G+ IDEFDKM E DR AIHE MEQQT+SIAKAGITT+LN+R +VLAAAN +GR
Sbjct: 439 ADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRAY 498
Query: 491 DTKADDNIDFMPTILSRFDMIFIVKDEHDQNRDIARYVLMRTGALQHERQADKRLSIPIT 550
+ A + +P R++ Y+ +++ E T
Sbjct: 499 ISTARRVVPSVP-------------------RELEEYIATAYSSIRQEEAKSNAPHSYTT 539
Query: 551 VRQLEAIVRISESLAKMQLQPFATEAHVNEALRLFQVS 588
+R L +I+RIS +LA+++ ++ V+EALRL Q+S
Sbjct: 540 IRTLLSILRISIALARLRFSETVAQSDVDEALRLMQMS 577
>05_05_0208 +
23275931-23275996,23276084-23276196,23276279-23276459,
23276590-23276674,23276974-23277104,23277194-23277432,
23277512-23277748,23277838-23277992,23278039-23278271,
23278359-23278521,23278613-23278818,23278960-23279019,
23279106-23279198,23279406-23279569,23280070-23280138,
23280241-23280382,23280490-23280546
Length = 797
Score = 256 bits (627), Expect = 4e-68
Identities = 142/328 (43%), Positives = 209/328 (63%), Gaps = 24/328 (7%)
Query: 215 CKCIDYQVLKLQEAPESIPQGEMPRHLTVYCDRTLCERVAPGARVTVLGIYSIKKIAKVG 274
C+ D+Q L +QE PE+ G++PR + + + L + PG RV+++G+Y
Sbjct: 206 CEYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVSIVGVYK-------A 258
Query: 275 REGRDKGSV-GVRSSYLRA--VGLTAEEGVTSGLRPFTAEEEEQFRRLAASPDIYERIGK 331
G+ KGSV GV + L A V L +E + +T E+ ++ + ++ D ++ +G
Sbjct: 259 LPGKSKGSVSGVFRTVLIANNVSLMNKE---ANAPVYTREDLKRMKEISRRNDTFDLLGN 315
Query: 332 SIAPSVFGAVDMKKAIACLLFGGSRKRLPDGLTRRGDINILLLGDPGTAKSQLLKFVEKV 391
S+APS++G + +KKA+ L+ GG K L +G RGDIN++++GDP AKSQLL+ V +
Sbjct: 316 SLAPSIYGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAVMNI 375
Query: 392 APIGVYTSGKGSSAAGLTASVIRDP--GSRNFV------MEGGAMVLADGGVVCIDEFDK 443
AP+ + T+G+GSS GLTA+V D G +F+ +E GAMVLAD GVVCIDEFDK
Sbjct: 376 APLAISTTGRGSSGVGLTAAVTSDQETGLSDFLWLGERRLEAGAMVLADRGVVCIDEFDK 435
Query: 444 MREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWD-DTKADDNIDFMP 502
M + DRVAIHE MEQQT++IAKAGI +LN+RCSV+AAAN ++G +D NI
Sbjct: 436 MNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVIAAANPIYGTYDRSLTPTKNIGLPD 495
Query: 503 TILSRFDMIFIVKDEHDQ--NRDIARYV 528
++LSRFD++FIV D+ D +R I+ +V
Sbjct: 496 SLLSRFDLLFIVLDQMDPEIDRQISEHV 523
Score = 34.7 bits (76), Expect = 0.24
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 546 SIPITVRQLEAIVRISESLAKMQLQPFATEAHVNEALRLFQVSTLDAAMT 595
++PIT R LE I+R+S + AKM+L+ + V AL++ + +T
Sbjct: 628 TLPITARTLETIIRLSTAHAKMKLRHEVLKTDVEAALQVLNFAIYHKELT 677
>05_03_0079 +
8212648-8212724,8212844-8212993,8213211-8213351,
8213658-8213820,8213901-8214094,8214174-8214369,
8214462-8214539,8214933-8215162,8215574-8215688,
8215878-8215952,8216032-8216172,8216309-8216512,
8216586-8216747,8216787-8216794,8217099-8217223,
8217316-8217438,8218177-8218307,8218527-8218658
Length = 814
Score = 242 bits (593), Expect = 6e-64
Identities = 131/287 (45%), Positives = 184/287 (64%), Gaps = 6/287 (2%)
Query: 299 EGVTSGLRPFTAEEEEQFRRLAASPDIYERIGKSIAPSVFGAVDMKKAIACLLFGGSRKR 358
+G S + FT EEE++ R+ PD + +I SI P+VFG ++K+AI +L GG K
Sbjct: 323 DGDDSERQKFTEEEEDEVVRMRNVPDFFNKIVDSICPTVFGHQEIKRAILLMLLGGVHKI 382
Query: 359 LPDGLTRRGDINILLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSAAGLTASVIRDPGS 418
+G+ RGDIN+ ++GDP AKSQ LK+ + P VYTSGK SSAAGLTA+V ++P +
Sbjct: 383 THEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPET 442
Query: 419 RNFVMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSV 478
F +E GA++LAD G+ CIDEFDKM D+VAIHEAMEQQTISI KAGI TLN+R S+
Sbjct: 443 GEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNARTSI 502
Query: 479 LAAANSVFGRWDDTK-ADDNIDFMPTILSRFDMIFIVKDEHDQNRDIARYVLMRTGALQH 537
LAAAN GR+D +K N+ P ILSRFD+++I+ DE D+N D Y + H
Sbjct: 503 LAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYIMIDEPDENTD---YHIAHHIVRVH 559
Query: 538 ERQADKRLSIPITVRQLEAIVRISESLAKMQLQPFATEAHVNEALRL 584
+++ ++ L+ + +L+ + ++SL K QL A + V + L
Sbjct: 560 QKR-EEALAPAFSTAELKRYIAFAKSL-KPQLSSEAKKVLVESYVTL 604
Score = 54.8 bits (126), Expect = 2e-07
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 118 EDIQVLLSSDAHSSNLRELKSETVSRLVKIPGIVISASGIKAKATKISIQCRSCRNVIPN 177
+DI + + LREL + + +L + G+V S ++ + + + +C C NV+ N
Sbjct: 109 KDINIAFYNIPMLKRLRELGTAEIGKLTAVMGVVTRTSEVRPELLQGTFKCLDCGNVVKN 168
Query: 178 LPVKPGLEGYVMPRKC-NTEQSGRPKCPLDPYFIIPDKCKCIDYQVLKLQEAPESIPQGE 236
+ + Y P C N R K + ++ + K D+Q +++QE + IP G
Sbjct: 169 VEQQ---FKYTEPIICVNATCQNRSK-----WALLRQESKFTDWQRVRMQETSKEIPAGS 220
Query: 237 MPRHLTVYCDRTLCERVAPGARVTVLG 263
+PR L V + E+ G V G
Sbjct: 221 LPRSLDVILRHEIVEKARAGDTVIFTG 247
Score = 34.3 bits (75), Expect = 0.32
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 524 IARYVLMRTGALQHERQADKRLSIPITVRQLEAIVRISESLAKMQLQ 570
+ YV +R G + R++ +TVRQLEA++R+SE++A+ L+
Sbjct: 598 VESYVTLRRG----DSTPGTRVAYRMTVRQLEALIRLSEAIARSHLE 640
>06_01_0809 -
6100025-6100251,6100456-6100565,6100919-6100986,
6101108-6101229,6101446-6101527,6101629-6101695,
6102811-6102883,6103032-6103148,6104167-6104259,
6104430-6104495,6105121-6105218,6105917-6106016,
6106486-6106660,6106828-6106894,6107574-6107712,
6107830-6107926,6107992-6108130,6108212-6108363
Length = 663
Score = 210 bits (512), Expect = 4e-54
Identities = 135/397 (34%), Positives = 211/397 (53%), Gaps = 12/397 (3%)
Query: 130 SSNLRELKSETVSRLVKIPGIVISASGIKAKATKISIQCRSCRNVIPNLPVKPGLEGYVM 189
S ++ +++ + L+ + G VI + G+K + QCR C+ P +
Sbjct: 132 SPSIGKVRVKHRGTLLTLKGTVIRSGGVKMIEGERKYQCRKCKCRFTVHPELEAGNRITL 191
Query: 190 PRKCNTEQSGRPKCPLDPYFIIPDKCKCIDYQVLKLQEAPESIPQGEMPRHLTVYCDRTL 249
P C ++ + C + +I D C DYQ +K+QE + + G +PR + + L
Sbjct: 192 PASCKSKSA--KGCGGANFQLIEDSITCHDYQEIKIQENIQLLGVGSIPRSMPIILMDDL 249
Query: 250 CERVAPGARVTVLGIYSIKKIAKVGREGRDKGSVGVRSSYLRAVGLTAEEGVTSGLRPFT 309
+ V G V V G S K + ++ R + ++++R T E +
Sbjct: 250 VDIVKAGDDVVVTGRLSAKWSPDI-KDVRSNLDPMLIANFVRR---TNELKSDLDIPVEI 305
Query: 310 AEEEEQFRRLAASPDIYER--IGKSIAPSVFGAVDMKKAIACLLFGGSRKRLPDGLTRRG 367
+ E+F + + + R I K I P ++G +K A+A L GG + G RG
Sbjct: 306 INKFEEFWAASRATPLKGRNSILKGICPQIYGLFTVKLAVALTLIGGVQHVDASGTKVRG 365
Query: 368 DINILLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSAAGLTASVIRDPGSRNFVMEGGA 427
+ ++LL+GDPGT KSQ LKF K++ V T+G GS++AGLT + ++D G +++E GA
Sbjct: 366 EPHMLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGE--WMLEAGA 423
Query: 428 MVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFG 487
+VLADGG+ CIDEFD MRE DR IHEAMEQQTISIAKAG+ TTLN+R +V A N G
Sbjct: 424 LVLADGGLCCIDEFDSMREHDRTTIHEAMEQQTISIAKAGLVTTLNTRTTVFGATNPK-G 482
Query: 488 RWDDTKA-DDNIDFMPTILSRFDMIFIVKDEHDQNRD 523
++D ++ N +LSRFD++ ++ D ++ D
Sbjct: 483 QYDPNESLSVNTTLSGPLLSRFDIVLVLLDTKNKKWD 519
>05_05_0138 +
22644263-22644460,22644617-22644711,22645786-22645949,
22646725-22646970,22647600-22647944,22648516-22648586,
22648676-22648794,22650508-22650637,22650806-22650857,
22650974-22651136,22651244-22651418,22651772-22651942,
22652275-22652388,22652559-22652609
Length = 697
Score = 151 bits (367), Expect = 1e-36
Identities = 75/152 (49%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 373 LLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSAAGLTASVIRDPGSRNFVMEGGAMVLAD 432
+LGDPG KSQLL+ V+P G+Y G ++ AGLT +V++D S ++ E GAMVLAD
Sbjct: 297 ILGDPGLGKSQLLQAAAAVSPRGIYVCGNTTTNAGLTVAVVKDSMSNDYAFEAGAMVLAD 356
Query: 433 GGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDT 492
G+ CIDEFDKM + + A+ EAMEQQ +S+AKAG+ +L++R SVLAAAN V G +D
Sbjct: 357 RGICCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYDRA 415
Query: 493 K-ADDNIDFMPTILSRFDMIFIVKDEHDQNRD 523
K ++N+ +LSRFD++FI+ D+ D+ D
Sbjct: 416 KTVNENLKMSAALLSRFDLVFILLDKPDELLD 447
Score = 57.6 bits (133), Expect = 3e-08
Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 30/236 (12%)
Query: 223 LKLQE--APESIPQGEMPRHLTVYCDRT--LCERVAPGARVTVLGIYSI-KKIAKVG--- 274
LK+QE + ES +G +PR T+ C+ T L + PG VTV GI + VG
Sbjct: 97 LKIQELASGESHEEGRVPR--TIECELTEDLVDCCIPGETVTVTGIVKVLNNYMDVGGGK 154
Query: 275 REGRDKG-------SVGVRSSYLRAVGLTAEEGVTS-GLRPFTAEEEEQFRRLAAS--PD 324
+ R++G ++ VR+S + A ++ S G + FT ++ E + D
Sbjct: 155 SKSRNQGLYYLYLEAISVRNSKVHAASGNSDAASGSFGFQAFTEKDLEFISKFKEEHGAD 214
Query: 325 IYERIGKSIAPSVFGAVDMKKAIACLLFGGSRKRLPD--GLTRRGDINILLLGDPGTAKS 382
++ +I S PS++G +K I LFGG +K D + RGDI+ +++G+P +
Sbjct: 215 VFRQILHSFCPSIYGHELVKAGITLALFGGVQKHSIDQNKVPVRGDIHAVVVGNPSLIEG 274
Query: 383 QLLKFVEKVAPIGVYTSGKGSSAAGLTASVIRDPG-SRNFVMEGGAMVLADGGVVC 437
L F+ + ++ + L +++ DPG ++ +++ A V G VC
Sbjct: 275 --LSFL-----VRIFLAFLTVQLKLLLNAILGDPGLGKSQLLQAAAAVSPRGIYVC 323
Score = 37.5 bits (83), Expect = 0.034
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 535 LQHERQADKRLSIPITVRQLEAIVRISESLAKMQLQPFATEAHVNEALRLFQVSTLD 591
L +Q+D PIT RQLE++VR++E+ A++ L+ T E + + S D
Sbjct: 542 LDLRKQSDSADGTPITARQLESLVRLAEARARVDLREEVTLEDAKEVIDIMTESLYD 598
>05_01_0516 + 4354494-4354575,4354621-4354832
Length = 97
Score = 63.7 bits (148), Expect = 5e-10
Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 15/95 (15%)
Query: 394 IGVYTSGKGSSAAGLTASVIRD-----------PGSRNFV--MEGGAMVLADGGVVCIDE 440
I + T+G+ SS GL A+V D G R + GA+VLAD VCIDE
Sbjct: 3 IALSTTGRVSSGVGLPAAVTSDRETEVLNKILWTGERRQSGGLVAGAIVLADRCAVCIDE 62
Query: 441 FDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSR 475
FDKM + DRVAIH +E +T++I AGI +LN+R
Sbjct: 63 FDKMNDQDRVAIHAVLEHKTVTI--AGIHASLNAR 95
>06_03_1386 +
29816744-29816941,29817030-29817330,29817421-29817579,
29818916-29819211,29819534-29819761
Length = 393
Score = 35.9 bits (79), Expect = 0.11
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 371 ILLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSAAGLTASVIRDPGSRNFVMEGGAMVL 430
+LL G PGT K+ L K + K + V+ + + S+ L + D + A L
Sbjct: 122 VLLYGPPGTGKTMLAKAIAKESG-AVFINVRISN---LMSKWFGDAQKLVSAVFSLAHKL 177
Query: 431 ADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKA--GITTTLNSRCSVLAAAN 483
++ IDE D R HEAM G TT N+R VLAA N
Sbjct: 178 -QPAIIFIDEVDSFLGQRRTTDHEAMTNMKTEFMSLWDGFTTDQNARVMVLAATN 231
>01_01_0671 -
5137787-5137843,5138420-5138503,5138595-5138662,
5138854-5138935,5139282-5139346,5139504-5139747
Length = 199
Score = 33.1 bits (72), Expect = 0.74
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 251 ERVAPGARVTVLGIYSIKKIAKVGREGRDKGSVGVRSSYLRAVGLTAEEGVTSGLRPFTA 310
ER P R G+Y + +A D VG R L+ VG++A +G TS +A
Sbjct: 31 ERCKPWLRANAPGVYPDELLASSSSAAADVDKVGER---LQGVGISAADGSTSA-GDASA 86
Query: 311 EEEEQFRRL 319
++E+ +RL
Sbjct: 87 SKQEEVKRL 95
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 31.9 bits (69), Expect = 1.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 153 SASGIKAKATKISIQCRSCRNVIPNLPVKPGLEGYVMPRKCNTEQSGRPK 202
S S + A A + ++C CR V L V PG+ ++ P KC Q P+
Sbjct: 10 SPSPVAASAAPVQVRCAGCRGV---LAVAPGMTEFICP-KCRMAQRLPPE 55
>10_01_0307 +
3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 31.1 bits (67), Expect = 3.0
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 437 CIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDDTKADD 496
C D D +RE+ V + E +EQ+ +SI + +L S SV A ++T +
Sbjct: 175 CSDSIDAVREEASVLVREEVEQRLLSI----VRDSLASAFSVKGGAELTISWLEETLIEI 230
Query: 497 NIDFMPTILSRFD 509
N+ F L +D
Sbjct: 231 NLIFDILFLFFYD 243
>09_04_0398 + 17278163-17278480
Length = 105
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 27 NLQAVKKKFKEFMRQFHTGNFNYKYRDALKR 57
N AV++KFKE++RQF T RD L+R
Sbjct: 23 NETAVREKFKEWIRQFDTDGDGRISRDELRR 53
>09_03_0142 - 12718888-12719724,12719767-12720369
Length = 479
Score = 30.7 bits (66), Expect = 4.0
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 233 PQG-EMPRHLTVYCDRTLCERVAPGARVTVLGIYSIKKIAKVGRE--GRD----KGSVGV 285
P G E P H T+ D P A T G+ S ++IA+V RE G D G+ G
Sbjct: 379 PMGVEQPLHATLAVDELRIGVRVPAAATTGHGVVSGEEIARVARELMGMDGEGENGAGGE 438
Query: 286 RSSYLRAVGLTAEEGVTSGLRPFTAEEE 313
+ A+ A E V G + EE
Sbjct: 439 AARNAAALAAKAREAVAEGGSSWKTLEE 466
>02_02_0371 -
9513742-9514293,9514784-9514923,9515217-9515556,
9515659-9515721,9515812-9515910,9516016-9516126,
9517114-9517257
Length = 482
Score = 30.7 bits (66), Expect = 4.0
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 350 LLFGGSRKRLPDGLTRRGDINILLLGDPGTAKSQLLKFVEKVA-PIGVYTSGKGSSA--A 406
+LF R+ + G+ R ++ LG+PGT K+ + + + K+ +GV + K +
Sbjct: 223 MLFDEKRRAMGLGIASRRAPHMAFLGNPGTGKTMVARILGKLLHMVGVLPTDKVTEVQRT 282
Query: 407 GLTASVI--RDPGSRNFVMEGGAMVLADGGVVCIDEFDKM----REDDRVAIHEAMEQ 458
L + P +R + + A+GG++ +DE ++ + DD+ EA+E+
Sbjct: 283 DLVGEFVGHTGPKTRRKIQD------AEGGILFVDEAYRLIPMQKSDDKDYGVEALEE 334
>02_01_0628 +
4717963-4718175,4718719-4718857,4719514-4719740,
4719825-4719998,4720090-4720176
Length = 279
Score = 30.7 bits (66), Expect = 4.0
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 528 VLMRTGALQHERQA--DKRLSIPITVRQLEAIVRISESLAKMQLQPFATEAHVNEA 581
VL R A+QHERQ D+R +++QL +++ E + +++ +A H+ +A
Sbjct: 211 VLKRAVAIQHERQKEFDERTQEVHSLKQL--VLQYQEQIKTLEINNYALRVHLKQA 264
>04_01_0152 -
1757244-1757369,1758675-1758926,1759594-1759665,
1760529-1760648,1761014-1761037
Length = 197
Score = 29.5 bits (63), Expect = 9.1
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 393 PIGVYTSGKGSSAAGLTASVIRDPGSRNFVMEGGAMVLADGG 434
P V T+G G +GL +V G M GGA + DGG
Sbjct: 110 PAPVTTAGGGCGGSGLATTVDGGGGGSGAPMAGGADLANDGG 151
>02_05_0693 -
30977323-30977421,30977783-30977843,30978874-30978996,
30979258-30979340,30979847-30979924,30980375-30980506,
30980685-30980728,30980966-30981090,30981468-30981769,
30981877-30981994,30982444-30982574,30983082-30983276,
30983362-30983646
Length = 591
Score = 29.5 bits (63), Expect = 9.1
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 430 LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRW 489
L DGG++ +DE D +HEA ++ +S+ I R V+ AA
Sbjct: 434 LPDGGIIFLDEVDSFASARDSEMHEA-TRRILSVILRQIDGFEQDRRVVVIAA------- 485
Query: 490 DDTKADDNIDFMPTILSRFDMI--FIVKDEHDQNRDIARY 527
T +++D P ++SRFD I F + D+ + A+Y
Sbjct: 486 --TNRKEDLD--PALISRFDSIICFDLPDQQTRAEISAQY 521
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,612,386
Number of Sequences: 37544
Number of extensions: 792616
Number of successful extensions: 1903
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1845
Number of HSP's gapped (non-prelim): 36
length of query: 675
length of database: 14,793,348
effective HSP length: 87
effective length of query: 588
effective length of database: 11,527,020
effective search space: 6777887760
effective search space used: 6777887760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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