Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005149-TA|BGIBMGA005149-PA|undefined
(192 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0694 + 5372779-5373429 28 4.2
08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895 27 7.4
09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964 27 9.7
07_02_0032 - 12037507-12038435,12038475-12038586,12038912-120391... 27 9.7
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 27 9.7
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 27 9.7
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 27 9.7
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 27 9.7
>01_01_0694 + 5372779-5373429
Length = 216
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 76 HLYHPGTDKCWPAFRQGPCEVGQYLVLPQNSVIPVCEQNP 115
H +HP KC PA P P SV+ CE P
Sbjct: 53 HRWHPRVAKCRPA---SPSAAASTAAAPPGSVVRYCEGTP 89
>08_02_0565 + 18751383-18751676,18751739-18751825,18752593-18752895
Length = 227
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 70 CDCRPAHLYHPG-TDKCWPAFRQGPCEV 96
CDC+ AH+YH G D +P G CE+
Sbjct: 162 CDCKYAHIYHMGQADGNYPF---GQCEL 186
>09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964
Length = 586
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 103 PQNSVIPVCEQNPCNTDTLVQLNGNCEKLGSIAPCNHLY--PVSSS 146
PQN I V E P TD+LV+ N + + P NH + PV SS
Sbjct: 499 PQN--IQVVEVEPPKTDSLVKFMQNFLEKETTMPRNHYWKTPVKSS 542
>07_02_0032 -
12037507-12038435,12038475-12038586,12038912-12039199,
12039395-12039622
Length = 518
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 98 QYLVLPQNSVIPVCEQNPCNTDTLVQLNGNCEKLGSIAPCNHLY 141
+Y + PQN I V E P TD LV+ NC + + P N +
Sbjct: 463 KYRLNPQN--IQVVEVEPPKTDNLVKFMQNCLEKETTMPRNRYW 504
>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 105 NSVIPVCEQNPCNTDTLVQLNGNCEKLGSIAPCNHLYPVSSSLGVNSTTLVV--SCVTLS 162
N I V + PC+ N + + H LGVN +++V S V S
Sbjct: 933 NYAIDVENEIPCDAHNNGSTNKSVASKANETSFRHTPSHDKELGVNDDSVIVSKSAVRFS 992
Query: 163 LETRFTEVIGVLCP 176
L F + G+L P
Sbjct: 993 LSPNFEKDQGLLTP 1006
>06_03_1306 + 29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 53 CPDNELFYPGD-QKDDWICDCRPAHL-YHPGTDKCWPAFRQGPCEVGQYLVLPQ 104
CP L+ D K+D C+ R H Y P D+ W + P Y++ P+
Sbjct: 977 CPIGILYDAMDCAKEDIKCNLRDKHGDYWPMVDEIWDHYLHTPVHAAGYILNPR 1030
>04_04_0585 - 26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 105 NSVIPVCEQNPCNTDTLVQLNGNCEKLGSIAPCNHLYPVSSSLGVNSTTLVV--SCVTLS 162
N I V + PC+ N + + H LGVN +++V S V S
Sbjct: 1104 NYAIDVENEIPCDAHNNGSTNKSVASKANETSFRHTPSHDKELGVNDDSVIVSKSAVRFS 1163
Query: 163 LETRFTEVIGVLCP 176
L F + G+L P
Sbjct: 1164 LSPNFEKDQGLLTP 1177
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 52 RCPDNELFYPGDQKDDWICDCRPAHLYHPGTDKC 85
RC D + D+ +D CDC P PGT C
Sbjct: 44 RCRDGSGRFARDKLNDDFCDC-PDGTDEPGTSAC 76
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.138 0.453
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,234,132
Number of Sequences: 37544
Number of extensions: 271256
Number of successful extensions: 448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 8
length of query: 192
length of database: 14,793,348
effective HSP length: 78
effective length of query: 114
effective length of database: 11,864,916
effective search space: 1352600424
effective search space used: 1352600424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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