GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005148-TA|BGIBMGA005148-PA|IPR000618|Insect cuticle
protein
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   5.2  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    24   5.2  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    24   6.8  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    23   9.0  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    23   9.0  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    23   9.0  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 32  QDSDVNPEGYNFDF 45
           Q+  V PEG+NFDF
Sbjct: 760 QEPGVVPEGWNFDF 773


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 8/41 (19%), Positives = 24/41 (58%)

Query: 30   LKQDSDVNPEGYNFDFETSDGTSRQEKGTLKQISEDHKAIE 70
            L+ ++   PE  +F +   D  ++  + T++++ ++H A++
Sbjct: 1032 LRSNTISTPEFGSFTYRNLDFLNKANRNTIQKLRKEHMAVK 1072


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 26  PVYILKQDSDVNPEGYNFDFETSDGTSRQ 54
           PV+ L++ S  N E +N+ F T    S Q
Sbjct: 728 PVFQLERSSAFNDEQFNYVFNTLTSISDQ 756


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 42  NFDFETSDGTSRQEKGTLKQISEDH-KAIEVTGSYKYVG 79
           N DFET+D   ++  G + QI        E TG  K  G
Sbjct: 234 NLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFG 272


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 24  EHPVYILKQDSDVNPEGYNFDFETSDGTS 52
           +HP   LK DS + PE  N      DG+S
Sbjct: 915 QHPEIPLKPDSLLGPEEENATASHIDGSS 943


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 18  PQQQQPEHPVYILKQDSDVNPEGYNFDFE 46
           P  Q PE  V + +  + +NP  + FD E
Sbjct: 93  PHDQPPERDVSLKESSNKINPSNF-FDSE 120


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 501,347
Number of Sequences: 5004
Number of extensions: 18940
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 6
length of query: 114
length of database: 2,362,478
effective HSP length: 64
effective length of query: 50
effective length of database: 2,042,222
effective search space: 102111100
effective search space used: 102111100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 48 (23.4 bits)