GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005148-TA|BGIBMGA005148-PA|IPR000618|Insect cuticle
protein
         (114 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    56   1e-10
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   2.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   4.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   8.3  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
          protein protein.
          Length = 138

 Score = 56.0 bits (129), Expect = 1e-10
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 29 ILKQDSDVNPEG-YNFDFETSDGTSRQEKGTLKQISEDHKAIEVTGSYKYVGTDGLVYTV 87
          I  Q  +VN +G Y  +FETS+G S QE G  KQ+  +   +   GS  Y   DG   ++
Sbjct: 29 ITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDGQQVSI 87

Query: 88 TFIADEHGFQPQ 99
          T++ADE+GFQ Q
Sbjct: 88 TYVADENGFQVQ 99


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 86  TVTFIADEHGFQPQEHVEHPGAD 108
           T+   ADE      +H+ HPG D
Sbjct: 370 TINGRADEEAAPAPQHLIHPGKD 392


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 86  TVTFIADEHGFQPQEHVEHPGAD 108
           T+   ADE      +H+ HPG D
Sbjct: 370 TINGRADEEAAPAPQHLIHPGKD 392


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 86  TVTFIADEHGFQPQEHVEHPGAD 108
           T+   ADE      +H+ HPG D
Sbjct: 308 TINGRADEEAAPAPQHLIHPGKD 330


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 18  PQQQQPEHPVYILKQDSDVNPEGYNFDFETSDGTSRQEKGTLK 60
           PQQQQ +      +Q   +  + +N + E     S Q +  LK
Sbjct: 841 PQQQQQQQQQQQQQQRGPMTNDDFNPNIEEEASDSAQGRAILK 883



 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 97   QPQEHVEHPGADQQQYQQ 114
            QPQ+    P   QQQ QQ
Sbjct: 1523 QPQQQQPQPQQQQQQQQQ 1540



 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 97   QPQEHVEHPGADQQQYQQ 114
            QPQ+  +     QQQ QQ
Sbjct: 1449 QPQQQQQQQQQQQQQQQQ 1466


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 4/33 (12%)

Query: 50  GTSRQEKGTLKQISEDHKAIEVTGSYKYVGTDG 82
           G+ ++  G ++ +    K    TG++ ++G+DG
Sbjct: 349 GSDQEVAGVMRAV----KRCNATGAFSWIGSDG 377


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 18  PQQQQPEHPVYILKQDSDVNPEGYNFDFETSD 49
           P++ +   P + + +DS + P   +FD E  D
Sbjct: 391 PKEMKIWIPAFAIHRDSAIYPNPDSFDPERFD 422


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 96  FQPQEHVEHPGADQQQYQ 113
           F+P   + HPG   ++Y+
Sbjct: 191 FEPDLDMNHPGFADKEYR 208


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 97  QPQEHVEHPGADQQQYQQ 114
           QPQ+  +     QQQ QQ
Sbjct: 439 QPQQQQQQQQQQQQQQQQ 456


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,625
Number of Sequences: 429
Number of extensions: 1129
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 114
length of database: 140,377
effective HSP length: 50
effective length of query: 64
effective length of database: 118,927
effective search space:  7611328
effective search space used:  7611328
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)
S2: 39 (19.8 bits)