Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005147-TA|BGIBMGA005147-PA|IPR001373|Cullin
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 254 2e-68
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 83 9e-17
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 70 9e-13
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 62 2e-10
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 31 0.38
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 29 2.0
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 29 2.0
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 6.2
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 6.2
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 27 6.2
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 27 8.3
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 254 bits (623), Expect = 2e-68
Identities = 148/469 (31%), Positives = 237/469 (50%), Gaps = 14/469 (2%)
Query: 43 LFNIIIEYPDSQPAVEDIKICLAKTDLRPTLCKKLQNALETRLLHPGVNTPDILTAYIST 102
+ +I++ YP+S A+ED+++ + R L + + +L ++ IL Y+ST
Sbjct: 226 ILDIVLHYPNSLGAIEDLRLVARQKQQRQYLTETFVKDCTSSILTASSDSSYILLFYVST 285
Query: 103 IRALRHLDPSGVILETVTKPVRNYLRSREDTVRSVVSSLTXXXXXXXXXXXXXXXXXXXX 162
IR LDP GV+L+ KP+R++L RED + +VS L
Sbjct: 286 IRCFVALDPPGVLLDKAAKPIRSFLNEREDAYKCLVS-LLFVDGEKGLRSELSQIPTENI 344
Query: 163 XXXXXXXXXXXXNPDPVDADPKVDSNDRRTNDIISMLVNVYGSKELFVNEYRTLLADRLL 222
PDP+DA P D D++ L++++ SKE V E + LLADRLL
Sbjct: 345 DSTTDRFDNYHWMPDPIDAAP--DFKKPTDRDVVGSLISIFKSKEPLVKELQLLLADRLL 402
Query: 223 AQSVINTEKEIRYLELLKIRFGESQLHFCEVMLKDISDSKRINSLIHQDKTIEELNKKFT 282
+ + E E + +E LK RFGE+ L C VML DI +S+ I+ IH + + +
Sbjct: 403 QLTDYHYEVEAKNIEFLKYRFGETVLQMCSVMLNDIENSRFIDQSIHMENYVSK-----G 457
Query: 283 SNAMILSAQFWPPFKDESLELPEEIKEHFEAYTKSYEALKGNRTLSWKPHLGNVNLEIEI 342
+ ILS FWP LP +K+ +AY + Y K R L + P+LG+V LEIE+
Sbjct: 458 LHVTILSRLFWPTLSVRYFHLPGPLKKELDAYAEEYRERKRKRELVFLPNLGSVELEIEL 517
Query: 343 GEKKLDLTVSPFNATLIMHFQNKSEWTLDELHQVMKVPITILRRKITYWQSMGLIAEKST 402
++ L LTV+P A I F+ S +++ +++ P I+ R + +W ++ +
Sbjct: 518 EDRTLTLTVTPEQAAFISLFEETSTLHIEKAAELLDQPKEIVERHLKFWLHHRVLTDIGD 577
Query: 403 DHFVLVEADNKASVPSHQVQEMICEDEETESAMASAHDQREGELQVFWSYIVGMLTNLDC 462
D + + E + + + E + ++ + SA+ S + E++V+WS++VGMLTNL
Sbjct: 578 DRYRVRETEAETAT------ETVLDEIQGVSAVQSEAESSAAEMRVYWSFVVGMLTNLGA 631
Query: 463 LPLDRIHQMLKMFASQAPGTECSLMELRQFLDTKVRTHQLVLQGGMYKL 511
L L+RIH ML MF G + ELR+FL ++ +L GG YKL
Sbjct: 632 LELERIHNMLTMFIPPPNGYTRTQSELREFLALMIKEEKLEFTGGAYKL 680
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 83.0 bits (196), Expect = 9e-17
Identities = 46/183 (25%), Positives = 92/183 (50%), Gaps = 9/183 (4%)
Query: 187 SNDRRTNDIISMLVNVY---GSKELFVNEYRTLLADRLLAQSVINTEKEIRYLELLKIRF 243
S + ++ S +++++ SK++F Y+ +A RLL + + E+ L++LK
Sbjct: 398 SGGKPLKEVFSEILDLFRYIASKDIFEAYYKLDIAKRLLLNKSASAQNELMLLDMLKKTC 457
Query: 244 GESQLHFCEVMLKDISDSKRINSLIHQDKTIEELNKKFTSNAMILSAQFWPPFKDESLEL 303
G H E M +D++ SK S K L++ N +LS +WP + + + L
Sbjct: 458 GSQFTHSLEGMFRDVNISKEFTSSFRHSKAAHNLHRDLYVN--VLSQAYWPSYPESHIRL 515
Query: 304 PEEIKEHFEAYTKSYEALKGNRTLSWKPHLGN--VNLEIEIGEKKLDLTVSPFNATLIMH 361
P+++++ + + K Y + + + +SW LG+ V +G K +L++S F A +++
Sbjct: 516 PDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLGNK--ELSISLFQACVLLQ 573
Query: 362 FQN 364
F N
Sbjct: 574 FNN 576
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 69.7 bits (163), Expect = 9e-13
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 5/192 (2%)
Query: 180 DADPKVDSNDRRTNDIISMLVNVYGSKELFVNEYRTLLADRLLAQSVINTEKEIRYLELL 239
DA ++ + T L K++F Y+T LA RLL I+++ E+ + L
Sbjct: 436 DARKAIEGSIEATLQNSVTLFRFISEKDVFEKYYKTHLAKRLLNNRSISSDAELGMISRL 495
Query: 240 KIRFGESQLHFCEVMLKDISDSKRINSLIHQDKTIEELNKKFTSNAMILSAQFWP----P 295
K G E M D++ S+ + + ++ N IL++ FWP P
Sbjct: 496 KQEAGNVFTQKLEGMFNDMNLSQELLQEYKHNSALQSAKPALDLNVSILASTFWPIDLSP 555
Query: 296 FKDESLELPEEIKEHFEAYTKSYEALKGNRTLSWKPHLGNVNLEIEIGEKKLDLTVSPFN 355
K + P+ + + +T Y + R L W P +G+ ++ + ++K DL VS
Sbjct: 556 HKIK-CNFPKVLLAQIDQFTDFYLSKHTGRKLLWYPSMGSADVRVNFKDRKYDLNVSTIA 614
Query: 356 ATLIMHFQNKSE 367
+ +++ FQ+ E
Sbjct: 615 SVILLLFQDLKE 626
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 61.7 bits (143), Expect = 2e-10
Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 11/203 (5%)
Query: 181 ADPKVDSNDRRTNDIISMLVNVYG---SKELFVNEYRTLLADRLLAQSVINTEKEIRYLE 237
++ VD +D D +S ++ ++ K++F N Y LLA RL+ + + + E L
Sbjct: 428 SNKNVDIDD--VEDCLSSIIIIFRYVEDKDVFQNFYTKLLAKRLVNGTSNSQDAESSMLS 485
Query: 238 LLKIRFGESQLHFCEVMLKDISDSKRINSLIHQDKTIEELNKKFTSNAMILSAQFWPPFK 297
LK G + M +DIS S+ I Q N F+ A++L FWP
Sbjct: 486 KLKEVCGFEYTSKLQRMFQDISLSQEITEAFWQLPQSRAGNIDFS--ALVLGTSFWPLSP 543
Query: 298 DE-SLELPEEIKEHFEAYTKSYEALKGNRTLSWKPHLGNVNLEIEIGEK---KLDLTVSP 353
+ + LPEE+ +E + Y + R LSW HL ++ I + VS
Sbjct: 544 NNVNFHLPEELVPLYEGFQNYYYSCHNGRKLSWLFHLSKGEIKARINPQTNVTYVFQVST 603
Query: 354 FNATLIMHFQNKSEWTLDELHQV 376
+ +++ + ++ +T +EL ++
Sbjct: 604 YQMGVLLLYNHRDSYTYEELAKI 626
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 31.1 bits (67), Expect = 0.38
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 2 MNINHKKEDLKLYWNKINYAYPILDDKIFSDCTEAEYDEVQLFNIIIEYPDSQPAVEDIK 61
+N K+ K+ +++ +L+D E+ E L N + EY DS PA E +K
Sbjct: 454 LNSLQPKQQEKVVDSELEVDENLLEDATMIQDDESHEGESHLENSLSEYVDSVPAEEIVK 513
Query: 62 ICLAK 66
+ L K
Sbjct: 514 VNLTK 518
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 336 VNLEIEIGEKKLDLTVSPFNATLIMHFQNKSEWTLDELHQVMKVPITILRRKITYWQSMG 395
V LE + + LDL + N + ++ K+E T D+L +V + + +R Y SM
Sbjct: 1229 VFLERPLSQTPLDLPETLENTQIDIYPSFKTESTDDQLEKVTQTNVASNKRVAPYADSMA 1288
Query: 396 LIAEKSTDHF 405
+ +D F
Sbjct: 1289 NVGSPESDCF 1298
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 342 IGEKKLDLTVSPFNATLIMHFQNKSEWTLDELHQVMKVPIT-ILRRKITYWQSMGLIAEK 400
+ K L + + N I+ F +S+ + +++ V T IL I W S+ + E+
Sbjct: 594 VAAKVLPIFIKGPNNLDIVEFHKESKALIFNTLKILAVENTAILETVILSWISLSRVVEE 653
Query: 401 STDHFVLVE 409
HFVL+E
Sbjct: 654 EELHFVLLE 662
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 196 ISMLVNVYGSKELFVNEYRTLLADRLLAQSVINTEKE 232
+ LV + +KE NE+ T DRL+AQ V + +
Sbjct: 550 VEYLVRLLETKEFSENEFTTGWLDRLIAQKVTSARPD 586
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 344 EKKLDLTVSPFNATLIMHFQNKSEWTLDELHQVMKVPITILRRKITYWQ 392
E ++DL F + ++F NK E+ ++ L +K + I YWQ
Sbjct: 18 EDQIDLANKLFRGEVDVYFPNKEEFIINFLLDRLKENSNLTCVNIGYWQ 66
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.1 bits (57), Expect = 6.2
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 252 EVMLKDISDSKRINSLIHQDKTIEELNKKFTSNA------MILSAQFWPPFKDESLELPE 305
EV+L D+SD S I +KT EEL K+F S + +IL++ F D+ L
Sbjct: 435 EVLLDDLSDPSV--SSIKGNKTNEELEKEFKSTSDNFGKHIILTSSFSNQSADKGSSLAA 492
Query: 306 EIKEHFEAYT 315
E + E T
Sbjct: 493 EDDRNDEGST 502
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 283 SNAMILSAQFWPPFK--DESLELPEEIKEHFEAYTKSYEALKGNRTLSWK 330
SNA+IL + PF+ + P+E+ E+ + K+Y K ++L K
Sbjct: 65 SNALILKSNVDRPFELPKKRYITPDELTEYLVEFAKAYGLCKNQQSLQDK 114
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,512
Number of Sequences: 5004
Number of extensions: 90775
Number of successful extensions: 331
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 12
length of query: 514
length of database: 2,362,478
effective HSP length: 76
effective length of query: 438
effective length of database: 1,982,174
effective search space: 868192212
effective search space used: 868192212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -