GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005147-TA|BGIBMGA005147-PA|IPR001373|Cullin
         (514 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    29   0.092
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   2.6  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    23   4.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   6.1  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 29.1 bits (62), Expect = 0.092
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query: 64  LAKTDLRPTLCKKLQNALETRLLHPGVNTPDILTAYISTIRALRHLD 110
           L  T+L   +  KL+NAL+T L       PDIL   +  I  LR L+
Sbjct: 353 LRNTELVERMHNKLRNALQTVLAQNHPQHPDILRELLKKIPDLRTLN 399


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 418 SHQVQEMICEDEETESAMASAHDQREGELQVFWSYIVG 455
           S    + +   EE+ S+  S    +EG L+  WS ++G
Sbjct: 358 SQSSPKFVARREESNSSSPSLDLGKEGGLEAQWSRVLG 395


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 224 QSVINTEKEIR---YLELLKIRFGESQLHFCEVMLKDISDSKRINSLIHQDKTIEEL 277
           Q +++ EK+ R   YL + +     S LH  E  +K    ++R  +   Q+  IE+L
Sbjct: 19  QQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKL 75


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 97  TAYISTIRALRHLDPSGVILETVTKPVRNYLRS 129
           T ++   R+ RH D   + L+++   +RN+  S
Sbjct: 340 TQFLQVCRSRRHSDSCCLCLDSMNAVIRNFNES 372


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,045
Number of Sequences: 429
Number of extensions: 5671
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 5
length of query: 514
length of database: 140,377
effective HSP length: 61
effective length of query: 453
effective length of database: 114,208
effective search space: 51736224
effective search space used: 51736224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)