GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005146-TA|BGIBMGA005146-PA|undefined
         (449 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   6.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   6.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   9.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   9.1  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 183 SIENEILTNEDSLEQKELLYDINEENI 209
           S+E +++  E S EQ+ LL  +  E++
Sbjct: 219 SLEVQLVIEEQSTEQERLLLSVLPEHV 245


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 8/37 (21%), Positives = 22/37 (59%)

Query: 225 VTIKNVEQVTNVLIVDSTAPDVPKTSEDLKEDVSAEI 261
           V + N++Q  ++L+++  +PD       +  +++AE+
Sbjct: 658 VHVTNMDQYNSILMIEHLSPDHNGNYSCVARNLAAEV 694


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 55  LWFHKLVKNEPYVNVHICNLAAQTGVSRFTQIHDNWLYNKTENLEPH 101
           L ++++  N P+    I +  + +   +F  I DNW+    +N  P+
Sbjct: 308 LKYYEVGSNVPFNFKFITDANSSSTPEQFKVIIDNWIKGTPQNNVPN 354


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 415 DKTKPEDIKAEDRKMIQKIVEEVISERMNYTKS 447
           DKT+ E  ++++RK+I  +    IS   NY  +
Sbjct: 307 DKTERE--RSKERKIISSLSNNYISNISNYNNN 337


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 211 THALDNSH-EVNEKIVTIKNVEQVTNVLIVDSTAPDVPKTSEDLKED 256
           T +L N H E  EK++ +K+ E  +++   D       KT+E L  D
Sbjct: 640 TESLLNRHNEDMEKLMMLKHREFRSSIKASDKLKDSRIKTTEKLSTD 686


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.133    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,775
Number of Sequences: 429
Number of extensions: 4041
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 449
length of database: 140,377
effective HSP length: 60
effective length of query: 389
effective length of database: 114,637
effective search space: 44593793
effective search space used: 44593793
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)