Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005145-TA|BGIBMGA005145-PA|IPR006222|Glycine cleavage T
protein (aminomethyl transferase), IPR013977|Glycine cleavage
T-protein, C-terminal barrel
(334 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL359510-12|CAI15071.1| 356|Homo sapiens chromosome 1 open read... 163 8e-40
AB058743-1|BAB47469.2| 2443|Homo sapiens KIAA1840 protein protein. 36 0.27
AF225988-1|AAF35390.1| 1980|Homo sapiens voltage-gated sodium ch... 31 7.6
AF050736-1|AAD15789.1| 1980|Homo sapiens voltage-gated sodium ch... 31 7.6
AB027567-1|BAA78033.1| 1980|Homo sapiens sodium channel protein. 31 7.6
Z11559-1|CAA77651.1| 889|Homo sapiens iron regulatory factor pr... 30 10.0
M58510-1|AAA69900.1| 816|Homo sapiens iron-responsive regulator... 30 10.0
DQ496106-1|ABF47095.1| 889|Homo sapiens aconitase 1, soluble pr... 30 10.0
BC018103-1|AAH18103.1| 889|Homo sapiens aconitase 1, soluble pr... 30 10.0
AL161783-3|CAH72599.1| 434|Homo sapiens aconitase 1, soluble pr... 30 10.0
AL161783-2|CAH72598.1| 889|Homo sapiens aconitase 1, soluble pr... 30 10.0
AF261088-1|AAF99681.1| 790|Homo sapiens iron regulatory protein... 30 10.0
AB209480-1|BAD92717.1| 781|Homo sapiens aconitase 1 variant pro... 30 10.0
>AL359510-12|CAI15071.1| 356|Homo sapiens chromosome 1 open reading
frame 69 protein.
Length = 356
Score = 163 bits (396), Expect = 8e-40
Identities = 105/312 (33%), Positives = 160/312 (51%), Gaps = 31/312 (9%)
Query: 30 YPLESRKLLNIAGKDAGVYLQGLITNDMRHFEEGASSI-------YAMFLNTKGRVLYDV 82
+ L+ R LL + G DA +L GL+TN++ A+ YA FLN +GR LYDV
Sbjct: 51 FRLDGRTLLRVRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARAGYAHFLNVQGRTLYDV 110
Query: 83 LIH---KWNTDDSFLLECDKNVISHIQKHLKMYKLKRLVEITDLSNEYKIHALVPNVN-- 137
+++ + + FLLECD +V +QKHL +Y+++R V + + E ++ A++P+
Sbjct: 111 ILYGLQEHSEVSGFLLECDSSVQGALQKHLALYRIRRKVTV-EPHPELRVWAVLPSSPEA 169
Query: 138 IGVVTPTHNVN----IYKDPRLPELGMRIISPMSITHSELIKIPTKDIQIKNSEEGYKCL 193
G + + +DPR +G R+++ +P + Y
Sbjct: 170 CGAASLQERAGAAAILIRDPRTARMGWRLLTQ----DEGPALVPGGRL---GDLWDYHQH 222
Query: 194 RYKLGVSEGSEDLPPGVTFPLEVNCDYLHGVSFHKGCYIGQELTARVHHTGVVRKRIMPI 253
RY GV EG DLPPGV PLE N +++GVSF KGCYIGQELTAR HH GV+RKR+ P+
Sbjct: 223 RYLQGVPEGVRDLPPGVALPLESNLAFMNGVSFTKGCYIGQELTARTHHMGVIRKRLFPV 282
Query: 254 KFTQAV--DGLDKDSTINASENPKSTIGKLKGYIQNYGLGLI---RVKEALEAKSLVIGS 308
+F + G+ +T+ + T+GK + N GL L+ ++K L ++
Sbjct: 283 RFLDPLPTSGITPGATVLTASG--QTVGKFRAGQGNVGLALLWSEKIKGPLHIRASEGAQ 340
Query: 309 YTAEVLKPTWWP 320
P WWP
Sbjct: 341 VALAASVPDWWP 352
>AB058743-1|BAB47469.2| 2443|Homo sapiens KIAA1840 protein protein.
Length = 2443
Score = 35.5 bits (78), Expect = 0.27
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 58 RHFEEGASSIYAMFLNTKGRVLYDVLIHKWNTDDSFLLECDKNVISHIQKHLKMYKLKRL 117
+HF E ++ FLN + + L+ IH D+ L+ N+++ L+ + +K
Sbjct: 604 KHFSEQLLNLTLSFLNNQIKELF---IHTEELDEH--LQKGVNILTSYINELRTFMIKFP 658
Query: 118 VEITDLSNEYKIHALVPNV 136
++TD +EY +H VP V
Sbjct: 659 WKLTDAIDEYDVHENVPKV 677
>AF225988-1|AAF35390.1| 1980|Homo sapiens voltage-gated sodium channel
alpha subunit protein.
Length = 1980
Score = 30.7 bits (66), Expect = 7.6
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 156 PELGMRIISPMSITHSELIKIPTKDIQIKNSEEGYKCLRYKLGVSEGSE-DLPPGV-TFP 213
P L +R+ P+++ S+ + T+D+ ++ EG K SEGS D+ P V P
Sbjct: 1090 PNLTVRV--PIAVGESDFENLNTEDVSSESDPEGSKDKLDDTSSSEGSTIDIKPEVEEVP 1147
Query: 214 LEVNCDYLH-GVSFHKGC 230
+E +YL F +GC
Sbjct: 1148 VEQPEEYLDPDACFTEGC 1165
>AF050736-1|AAD15789.1| 1980|Homo sapiens voltage-gated sodium channel
alpha subunit protein.
Length = 1980
Score = 30.7 bits (66), Expect = 7.6
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 156 PELGMRIISPMSITHSELIKIPTKDIQIKNSEEGYKCLRYKLGVSEGSE-DLPPGV-TFP 213
P L +R+ P+++ S+ + T+D+ ++ EG K SEGS D+ P V P
Sbjct: 1090 PNLTVRV--PIAVGESDFENLNTEDVSSESDPEGSKDKLDDTSSSEGSTIDIKPEVEEVP 1147
Query: 214 LEVNCDYLH-GVSFHKGC 230
+E +YL F +GC
Sbjct: 1148 VEQPEEYLDPDACFTEGC 1165
>AB027567-1|BAA78033.1| 1980|Homo sapiens sodium channel protein.
Length = 1980
Score = 30.7 bits (66), Expect = 7.6
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 156 PELGMRIISPMSITHSELIKIPTKDIQIKNSEEGYKCLRYKLGVSEGSE-DLPPGV-TFP 213
P L +R+ P+++ S+ + T+D+ ++ EG K SEGS D+ P V P
Sbjct: 1090 PNLTVRV--PIAVGESDFENLNTEDVSSESDPEGSKDKLDDTSSSEGSTIDIKPEVEEVP 1147
Query: 214 LEVNCDYLH-GVSFHKGC 230
+E +YL F +GC
Sbjct: 1148 VEQPEEYLDPDACFTEGC 1165
>Z11559-1|CAA77651.1| 889|Homo sapiens iron regulatory factor
protein.
Length = 889
Score = 30.3 bits (65), Expect = 10.0
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 179 KDIQIKNSEEGYKCLRYKLGVSEGSEDLPPGVTFPLEVNCDYLHGVSFHK-GCYIGQELT 237
+D++ + + E ++ L++ +PPG +VN +YL V F + G Y L
Sbjct: 143 QDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLV 202
Query: 238 ARVHHTGVV 246
HT ++
Sbjct: 203 GTDSHTTMI 211
>M58510-1|AAA69900.1| 816|Homo sapiens iron-responsive regulatory
protein/iron regulatory protein 1 protein.
Length = 816
Score = 30.3 bits (65), Expect = 10.0
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 179 KDIQIKNSEEGYKCLRYKLGVSEGSEDLPPGVTFPLEVNCDYLHGVSFHK-GCYIGQELT 237
+D++ + + E ++ L++ +PPG +VN +YL V F + G Y L
Sbjct: 70 QDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLV 129
Query: 238 ARVHHTGVV 246
HT ++
Sbjct: 130 GTDSHTTMI 138
>DQ496106-1|ABF47095.1| 889|Homo sapiens aconitase 1, soluble
protein.
Length = 889
Score = 30.3 bits (65), Expect = 10.0
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 179 KDIQIKNSEEGYKCLRYKLGVSEGSEDLPPGVTFPLEVNCDYLHGVSFHK-GCYIGQELT 237
+D++ + + E ++ L++ +PPG +VN +YL V F + G Y L
Sbjct: 143 QDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLV 202
Query: 238 ARVHHTGVV 246
HT ++
Sbjct: 203 GTDSHTTMI 211
>BC018103-1|AAH18103.1| 889|Homo sapiens aconitase 1, soluble
protein.
Length = 889
Score = 30.3 bits (65), Expect = 10.0
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 179 KDIQIKNSEEGYKCLRYKLGVSEGSEDLPPGVTFPLEVNCDYLHGVSFHK-GCYIGQELT 237
+D++ + + E ++ L++ +PPG +VN +YL V F + G Y L
Sbjct: 143 QDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLV 202
Query: 238 ARVHHTGVV 246
HT ++
Sbjct: 203 GTDSHTTMI 211
>AL161783-3|CAH72599.1| 434|Homo sapiens aconitase 1, soluble
protein.
Length = 434
Score = 30.3 bits (65), Expect = 10.0
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 179 KDIQIKNSEEGYKCLRYKLGVSEGSEDLPPGVTFPLEVNCDYLHGVSFHK-GCYIGQELT 237
+D++ + + E ++ L++ +PPG +VN +YL V F + G Y L
Sbjct: 143 QDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLV 202
Query: 238 ARVHHTGVV 246
HT ++
Sbjct: 203 GTDSHTTMI 211
>AL161783-2|CAH72598.1| 889|Homo sapiens aconitase 1, soluble
protein.
Length = 889
Score = 30.3 bits (65), Expect = 10.0
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 179 KDIQIKNSEEGYKCLRYKLGVSEGSEDLPPGVTFPLEVNCDYLHGVSFHK-GCYIGQELT 237
+D++ + + E ++ L++ +PPG +VN +YL V F + G Y L
Sbjct: 143 QDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLV 202
Query: 238 ARVHHTGVV 246
HT ++
Sbjct: 203 GTDSHTTMI 211
>AF261088-1|AAF99681.1| 790|Homo sapiens iron regulatory protein 1
protein.
Length = 790
Score = 30.3 bits (65), Expect = 10.0
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 179 KDIQIKNSEEGYKCLRYKLGVSEGSEDLPPGVTFPLEVNCDYLHGVSFHK-GCYIGQELT 237
+D++ + + E ++ L++ +PPG +VN +YL V F + G Y L
Sbjct: 44 QDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLV 103
Query: 238 ARVHHTGVV 246
HT ++
Sbjct: 104 GTDSHTTMI 112
>AB209480-1|BAD92717.1| 781|Homo sapiens aconitase 1 variant
protein.
Length = 781
Score = 30.3 bits (65), Expect = 10.0
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 179 KDIQIKNSEEGYKCLRYKLGVSEGSEDLPPGVTFPLEVNCDYLHGVSFHK-GCYIGQELT 237
+D++ + + E ++ L++ +PPG +VN +YL V F + G Y L
Sbjct: 179 QDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLV 238
Query: 238 ARVHHTGVV 246
HT ++
Sbjct: 239 GTDSHTTMI 247
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,585,692
Number of Sequences: 224733
Number of extensions: 1918595
Number of successful extensions: 3528
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3523
Number of HSP's gapped (non-prelim): 15
length of query: 334
length of database: 73,234,838
effective HSP length: 90
effective length of query: 244
effective length of database: 53,008,868
effective search space: 12934163792
effective search space used: 12934163792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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