GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005145-TA|BGIBMGA005145-PA|IPR006222|Glycine cleavage T
protein (aminomethyl transferase), IPR013977|Glycine cleavage
T-protein, C-terminal barrel
         (334 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 20/83 (24%), Positives = 33/83 (39%)

Query: 135  NVNIGVVTPTHNVNIYKDPRLPELGMRIISPMSITHSELIKIPTKDIQIKNSEEGYKCLR 194
            + NIG    +  V +    R+P          + T+ E +K+P   + +   E  +K   
Sbjct: 1255 STNIGEGEASKIVALAPSVRVPAKIASFDDKFTATYKEDVKLPCLAVGVPAPEVTWKVRG 1314

Query: 195  YKLGVSEGSEDLPPGVTFPLEVN 217
              L  S+    LP G  F  EV+
Sbjct: 1315 AVLQSSDRLRQLPEGSLFIKEVD 1337


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 102 ISHIQKHLKMYKLKRLVEITDLSNEYKIHALVPNVNIGVVTPT 144
           +SH Q+ +     + +VE TD+S E   H  +     GV TPT
Sbjct: 694 VSHTQRLVVHVPPRWIVEPTDVSVERNKHVALHCQAQGVPTPT 736


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 6/41 (14%)

Query: 89  TDDSFLLE-CDKNVISHIQKHLKMYKLKRLVEITDLSNEYK 128
           TD S  ++ CD    + +Q       +K  +E TDLSNE K
Sbjct: 568 TDQSMDIDVCDNQTYTSLQM-----AMKNPIEFTDLSNERK 603


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 159 GMRIISPMSITHSELIKIPTKDIQIKNSEE 188
           G+ I+  +      +I IP K+I + ++EE
Sbjct: 347 GIDILDDVKCEDERVISIPDKEITVPSNEE 376


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 20  RYSHVENPILYPLESRKLLNIAGKDAGVYLQGLIT 54
           RY H+++P+ Y     + + +AG      L GLI+
Sbjct: 123 RYIHIKDPLRYGRWVTRRIAVAGIAVVWLLAGLIS 157


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 219 DYLHGVSFHKGCYIGQELTARVHHTGVVRKRIM 251
           D+L  +S   G  +GQ     VH    + KR++
Sbjct: 225 DHLRIISMQMGGDLGQVYRRLVHAVNEIEKRLL 257


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,784
Number of Sequences: 429
Number of extensions: 4093
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 334
length of database: 140,377
effective HSP length: 58
effective length of query: 276
effective length of database: 115,495
effective search space: 31876620
effective search space used: 31876620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)