GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005142-TA|BGIBMGA005142-PA|IPR000602|Glycoside
hydrolase, family 38, IPR011682|Glycosyl hydrolases 38, C-terminal,
IPR011013|Galactose mutarotase-like
         (1027 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    53   2e-07
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    29   2.5  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    29   3.3  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    28   5.8  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    28   5.8  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    28   7.6  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    28   7.6  

>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 14/194 (7%)

Query: 36  NKLKVFIVPHSHNDPGWLKTFENYYKSQTR--AIFNNMIEKLNEGVGRKFIWAEISFLSL 93
           +K  VF + H H D  WL  F    +   R  A   N++++  E    +F+ ++ +   L
Sbjct: 279 DKANVFAIGHCHIDTAWLWPFAETRRKIVRSWATQMNIMDRYPE---YQFVCSQ-ALQYL 334

Query: 94  WWNNDATEKDKTAFLNLLKSKKLEIVTGGWVMNDEANSHWLSVVQQLTTGHQWLLDNLGY 153
           W   D  +  +      +   K   + G WV +D    +  S+++Q   G  +     G 
Sbjct: 335 WLKEDHPDVFEK-LKEYVNQNKFIPIGGSWVEHDTNIPNGESLIRQFLLGQHFFEKEFGV 393

Query: 154 VPKNAWSIDPFGYSSAQPYLLKIAGFDNSMIQRVHYRIKKELASNRQLEFRWRQLWDGVG 213
             +  W  D FGYSS  P + ++ G D  + Q++ +     + S     F W  L DG  
Sbjct: 394 RCRTFWLPDTFGYSSQIPQICRLCGMDRFLTQKLSW---NNINSFPTSTFNWVAL-DG-- 447

Query: 214 KTDMFTHLFPFYSY 227
            + +  H+ P  +Y
Sbjct: 448 -SQVICHMPPANTY 460


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 104 KTAFLNLLKSKKLEIVTGGWVMNDEANSHWLSVVQQLTTGHQWLLDNLGYVPKN 157
           K A  NL+ SK +  V    +M D+ N   L    + +T  Q++LDN+  +  N
Sbjct: 915 KHAEKNLMNSKNVSTVFAPTLMRDKVNRFDLQHATKKSTALQFMLDNVDKILHN 968


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 706 TEGIHKSTLYAALVGPKTAEIILSVTVYNNPSLPHAELEVSSALL---IDPQVDDLELAL 762
           T+ IH++ L   L   +  E+IL  +  +  S+   +  VSS+ +   I P  +  +   
Sbjct: 537 TDDIHRTKLDTLLTQVRPKELILEKSKISQKSIRAIKYCVSSSSIWNFIKPYTEFWDNE- 595

Query: 763 RLSTSVRNGDVFYTDLNGMQMIKRRYFEKIPL 794
           R+   +  GD F   L G   I + Y  + PL
Sbjct: 596 RVEREIIAGDYFKNGLEGAPKILKSYLSEKPL 627


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 547  PIMAQVSPVVAGERRLGLANNKYQLSFPVTIGP 579
            PI ++V+ ++    R+GLA NK +L++   I P
Sbjct: 1109 PISSRVNSIIEDIARIGLAPNKVKLAYSHPINP 1141


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 172 YLLKIAGFDNSMIQRVHYRIKKELASNRQLEFRWRQLWDGVGKTDMF 218
           YL + A  D ++ + ++Y+ +++   N+  + +W++LW  V + D+F
Sbjct: 261 YLERQANKDENIKKIINYQTEEK---NKNKQSKWQKLWKAVLEVDLF 304


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 9   IMFDDKDGGVWKQGWNIEYNENQWSQKNKLKVFIVPHSHNDP--GWLKTFENYYKSQTRA 66
           IM D  +G +  Q +  +Y  N      KLK   + H H+D   G L   + + K+ T  
Sbjct: 438 IMLDCGEGAI-SQFFR-QYGTNTEPMLRKLKAIFITHLHSDHYLGLLNVLQAWNKANTN- 494

Query: 67  IFNNMIEKLNEGVGRKFIW 85
             N+M   +   +G KF+W
Sbjct: 495 --NSMHINI---IGPKFLW 508


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 564 LANNKYQLSFPVTIGPLALTVYSVSLRDAMSIN 596
           L  NKY++  P T   L  TV+  S+ DA+S N
Sbjct: 148 LIKNKYEVPEPGTREQLLETVFQASMGDAISTN 180


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,992,895
Number of Sequences: 5004
Number of extensions: 226571
Number of successful extensions: 476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 11
length of query: 1027
length of database: 2,362,478
effective HSP length: 80
effective length of query: 947
effective length of database: 1,962,158
effective search space: 1858163626
effective search space used: 1858163626
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)