GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005142-TA|BGIBMGA005142-PA|IPR000602|Glycoside
hydrolase, family 38, IPR011682|Glycosyl hydrolases 38, C-terminal,
IPR011013|Galactose mutarotase-like
         (1027 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    29   0.15 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    27   0.78 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    27   0.78 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    27   0.78 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    27   0.78 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    27   0.78 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   3.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 0.15
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 698 DPYPEIVVTEGIHKSTLY--AALVGPKTAEIILSVTVYNNPSLPHAELEVSSALLIDPQV 755
           +PYP+IV    + + TL+    L+ P      LSV V+  PS    ++ +S ++L+   V
Sbjct: 221 EPYPDIVFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLSISILLSLTV 280

Query: 756 DDLELA 761
             L LA
Sbjct: 281 FFLLLA 286


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 281 RKKAQLYRSNVLFFPLGDDFRYDHANEWDNQYQNYDMLIEY 321
           R + +  R   +   L +++ Y + N ++N Y NY+  + Y
Sbjct: 70  RTERERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKLYY 110


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 296 LGDDFRYDHANEWDNQYQNYDMLIEYINSN 325
           L ++++Y + N ++N Y NY+      N+N
Sbjct: 318 LSNNYKYSNYNNYNNNYNNYNNYNNNYNNN 347


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 608 NADYWSVVLPKIFPIEQPSARLNEDVSFQAGN 639
           NA  W +   K  P+ Q   R++ D  ++ GN
Sbjct: 492 NAGIWMIDFAKTLPLPQHLPRIHHDAEWKVGN 523


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 608 NADYWSVVLPKIFPIEQPSARLNEDVSFQAGN 639
           NA  W +   K  P+ Q   R++ D  ++ GN
Sbjct: 407 NAGIWMIDFAKTLPLPQHLPRIHHDAEWKVGN 438


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 608 NADYWSVVLPKIFPIEQPSARLNEDVSFQAGN 639
           NA  W +   K  P+ Q   R++ D  ++ GN
Sbjct: 726 NAGIWMIDFAKTLPLPQHLPRIHHDAEWKVGN 757


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 557 AGERRLGLANNKYQLSFPVTIGPLALTVYSVSLRDAMSINKYTSF---SHVRIYNADYW 612
           AG R  G   NK ++   +  G   L V    ++D   I+KY+         ++NA YW
Sbjct: 426 AGLRYRGPKQNKPKVLHAIRRGASILRVSMPKIKDVNIIDKYSRIIFPVSFMLFNAIYW 484


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 311,920
Number of Sequences: 429
Number of extensions: 14731
Number of successful extensions: 37
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 7
length of query: 1027
length of database: 140,377
effective HSP length: 65
effective length of query: 962
effective length of database: 112,492
effective search space: 108217304
effective search space used: 108217304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)