GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005141-TA|BGIBMGA005141-PA|undefined
         (133 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.0  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 27 KPGIRRECADGEGATFDGLLRAATDGGVRAYRAN 60
          KP IRR    G      GL+   T G ++ +  N
Sbjct: 32 KPAIRRLARRGGVKRISGLIYEETRGVLKVFLEN 65


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 68   VTTPAPPLLASRATRCARFPSHHRRALPARKLPQPISSVRSSKGLIYRQDQ 118
            VT P   L+A+  T  +     HRR L         S   + +   +RQ Q
Sbjct: 1304 VTVPGNNLIATNTTVSSGSSEDHRRPLSEHIYSSIDSDYSTLERTAWRQQQ 1354


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 94  LPARKLPQPISSVRSSKGLIYRQDQSRDT 122
           +P+ K+   ISSV+S   L  R  + R+T
Sbjct: 822 VPSTKVLAMISSVKSFMELSLRSVKDRET 850


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,940
Number of Sequences: 429
Number of extensions: 1100
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 133
length of database: 140,377
effective HSP length: 52
effective length of query: 81
effective length of database: 118,069
effective search space:  9563589
effective search space used:  9563589
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)