Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005137-TA|BGIBMGA005137-PA|IPR006138|NADH dehydrogenase
(ubiquinone), 20 kDa subunit, IPR006137|NADH ubiquinone
oxidoreductase, 20 kDa subunit
(244 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111517-1|AAI11518.1| 213|Homo sapiens NDUFS7 protein protein. 289 8e-78
BC005954-1|AAH05954.1| 213|Homo sapiens NADH dehydrogenase (ubi... 289 8e-78
BC001715-1|AAH01715.2| 208|Homo sapiens NDUFS7 protein protein. 289 8e-78
AK222738-1|BAD96458.1| 213|Homo sapiens NADH-ubiquinone oxidore... 289 8e-78
AF115969-1|AAP97240.1| 213|Homo sapiens NADH:ubiquinone oxidore... 289 8e-78
AC005329-1|AAC27669.1| 158|Homo sapiens NUKM_HUMAN, partial CDS... 288 1e-77
AK092169-1|BAC03820.1| 213|Homo sapiens protein ( Homo sapiens ... 237 3e-62
AF060512-1|AAG43130.1| 214|Homo sapiens My017 protein protein. 169 8e-42
AK128713-1|BAC87587.1| 155|Homo sapiens C 1.6.5.3). protein. 140 3e-33
Y08421-1|CAA69698.1| 627|Homo sapiens nicotinic acetylcholine r... 31 2.8
X89741-1|CAA61893.1| 627|Homo sapiens neuronal acetylcholine re... 31 2.8
X87629-1|CAA60959.1| 602|Homo sapiens nicotinic acetylcholine r... 31 2.8
U62433-1|AAB40111.1| 627|Homo sapiens nicotinic acetylcholine r... 31 2.8
L35901-1|AAA64743.1| 627|Homo sapiens nicotinic acetylcholine r... 31 2.8
DQ093071-1|AAY88737.1| 627|Homo sapiens cholinergic receptor, n... 31 2.8
BC096293-1|AAH96293.1| 451|Homo sapiens CHRNA4 protein protein. 31 2.8
BC096292-1|AAH96292.1| 451|Homo sapiens CHRNA4 protein protein. 31 2.8
BC096291-1|AAH96291.1| 556|Homo sapiens CHRNA4 protein protein. 31 2.8
BC096290-1|AAH96290.1| 627|Homo sapiens cholinergic receptor, n... 31 2.8
AL121827-20|CAC36119.1| 627|Homo sapiens cholinergic receptor, ... 31 2.8
AK127759-1|BAC87117.1| 294|Homo sapiens r (EC 1.6.5.3). protein. 31 2.8
AB209359-1|BAD92596.1| 533|Homo sapiens cholinergic receptor, n... 31 2.8
AK026727-1|BAB15538.1| 168|Homo sapiens protein ( Homo sapiens ... 30 8.5
>BC111517-1|AAI11518.1| 213|Homo sapiens NDUFS7 protein protein.
Length = 213
Score = 289 bits (708), Expect = 8e-78
Identities = 128/172 (74%), Positives = 151/172 (87%), Gaps = 3/172 (1%)
Query: 72 PKLGENREYSPFHEPGQSTAEWVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPR 131
P L + R +P +P S E+VVA+ DD++NW RR+S+WP+TFGLACCA+EMMH A PR
Sbjct: 44 PALPKARAVAP--KPS-SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPR 100
Query: 132 YDMDRFGMVFRGTPRQTDVIIVAGTVTNKMAPALRKTYDLMPEPRWVVSMGSCANGGGYY 191
YDMDRFG+VFR +PRQ+DV+IVAGT+TNKMAPALRK YD MPEPR+VVSMGSCANGGGYY
Sbjct: 101 YDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYY 160
Query: 192 HYTYSTVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKIKRMRVVQVWYR 243
HY+YS VRGCDRIVPVDIY+PGCPPTAEALLYG+LQLQ+KIKR R +Q+WYR
Sbjct: 161 HYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYR 212
>BC005954-1|AAH05954.1| 213|Homo sapiens NADH dehydrogenase
(ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q
reductas protein.
Length = 213
Score = 289 bits (708), Expect = 8e-78
Identities = 128/172 (74%), Positives = 151/172 (87%), Gaps = 3/172 (1%)
Query: 72 PKLGENREYSPFHEPGQSTAEWVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPR 131
P L + R +P +P S E+VVA+ DD++NW RR+S+WP+TFGLACCA+EMMH A PR
Sbjct: 44 PALPKARAVAP--KPS-SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPR 100
Query: 132 YDMDRFGMVFRGTPRQTDVIIVAGTVTNKMAPALRKTYDLMPEPRWVVSMGSCANGGGYY 191
YDMDRFG+VFR +PRQ+DV+IVAGT+TNKMAPALRK YD MPEPR+VVSMGSCANGGGYY
Sbjct: 101 YDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYY 160
Query: 192 HYTYSTVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKIKRMRVVQVWYR 243
HY+YS VRGCDRIVPVDIY+PGCPPTAEALLYG+LQLQ+KIKR R +Q+WYR
Sbjct: 161 HYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYR 212
>BC001715-1|AAH01715.2| 208|Homo sapiens NDUFS7 protein protein.
Length = 208
Score = 289 bits (708), Expect = 8e-78
Identities = 128/172 (74%), Positives = 151/172 (87%), Gaps = 3/172 (1%)
Query: 72 PKLGENREYSPFHEPGQSTAEWVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPR 131
P L + R +P +P S E+VVA+ DD++NW RR+S+WP+TFGLACCA+EMMH A PR
Sbjct: 39 PALPKARAVAP--KPS-SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPR 95
Query: 132 YDMDRFGMVFRGTPRQTDVIIVAGTVTNKMAPALRKTYDLMPEPRWVVSMGSCANGGGYY 191
YDMDRFG+VFR +PRQ+DV+IVAGT+TNKMAPALRK YD MPEPR+VVSMGSCANGGGYY
Sbjct: 96 YDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYY 155
Query: 192 HYTYSTVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKIKRMRVVQVWYR 243
HY+YS VRGCDRIVPVDIY+PGCPPTAEALLYG+LQLQ+KIKR R +Q+WYR
Sbjct: 156 HYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYR 207
>AK222738-1|BAD96458.1| 213|Homo sapiens NADH-ubiquinone
oxidoreductase Fe-S protein 7 variant protein.
Length = 213
Score = 289 bits (708), Expect = 8e-78
Identities = 128/172 (74%), Positives = 151/172 (87%), Gaps = 3/172 (1%)
Query: 72 PKLGENREYSPFHEPGQSTAEWVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPR 131
P L + R +P +P S E+VVA+ DD++NW RR+S+WP+TFGLACCA+EMMH A PR
Sbjct: 44 PALPKARAVAP--KPS-SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPR 100
Query: 132 YDMDRFGMVFRGTPRQTDVIIVAGTVTNKMAPALRKTYDLMPEPRWVVSMGSCANGGGYY 191
YDMDRFG+VFR +PRQ+DV+IVAGT+TNKMAPALRK YD MPEPR+VVSMGSCANGGGYY
Sbjct: 101 YDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYY 160
Query: 192 HYTYSTVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKIKRMRVVQVWYR 243
HY+YS VRGCDRIVPVDIY+PGCPPTAEALLYG+LQLQ+KIKR R +Q+WYR
Sbjct: 161 HYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYR 212
>AF115969-1|AAP97240.1| 213|Homo sapiens NADH:ubiquinone
oxidoreductase PSST subunit protein.
Length = 213
Score = 289 bits (708), Expect = 8e-78
Identities = 128/172 (74%), Positives = 151/172 (87%), Gaps = 3/172 (1%)
Query: 72 PKLGENREYSPFHEPGQSTAEWVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPR 131
P L + R +P +P S E+VVA+ DD++NW RR+S+WP+TFGLACCA+EMMH A PR
Sbjct: 44 PALPKARAVAP--KPS-SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPR 100
Query: 132 YDMDRFGMVFRGTPRQTDVIIVAGTVTNKMAPALRKTYDLMPEPRWVVSMGSCANGGGYY 191
YDMDRFG+VFR +PRQ+DV+IVAGT+TNKMAPALRK YD MPEPR+VVSMGSCANGGGYY
Sbjct: 101 YDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYY 160
Query: 192 HYTYSTVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKIKRMRVVQVWYR 243
HY+YS VRGCDRIVPVDIY+PGCPPTAEALLYG+LQLQ+KIKR R +Q+WYR
Sbjct: 161 HYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYR 212
>AC005329-1|AAC27669.1| 158|Homo sapiens NUKM_HUMAN, partial CDS
protein.
Length = 158
Score = 288 bits (706), Expect = 1e-77
Identities = 123/155 (79%), Positives = 143/155 (92%)
Query: 89 STAEWVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPRYDMDRFGMVFRGTPRQT 148
S E+VVA+ DD++NW RR+S+WP+TFGLACCA+EMMH A PRYDMDRFG+VFR +PRQ+
Sbjct: 3 SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQS 62
Query: 149 DVIIVAGTVTNKMAPALRKTYDLMPEPRWVVSMGSCANGGGYYHYTYSTVRGCDRIVPVD 208
DV+IVAGT+TNKMAPALRK YD MPEPR+VVSMGSCANGGGYYHY+YS VRGCDRIVPVD
Sbjct: 63 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 122
Query: 209 IYVPGCPPTAEALLYGMLQLQKKIKRMRVVQVWYR 243
IY+PGCPPTAEALLYG+LQLQ+KIKR R +Q+WYR
Sbjct: 123 IYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYR 157
>AK092169-1|BAC03820.1| 213|Homo sapiens protein ( Homo sapiens
cDNA FLJ34850 fis, clone NT2NE2011758, highly similar to
NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT PRECURSOR
(EC ).
Length = 213
Score = 237 bits (580), Expect = 3e-62
Identities = 108/152 (71%), Positives = 127/152 (83%), Gaps = 7/152 (4%)
Query: 72 PKLGENREYSPFHEPGQSTAEWVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPR 131
P L + R +P +P S E+VVA+ DD++NW RR+S+WP+TFGLACCA+EMMH A PR
Sbjct: 51 PALPKARAVAP--KPS-SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPR 107
Query: 132 YDMDRFGMVFRGTPRQTDVIIVAGTVTNKMAPALRKTYDLMPEPRWVVSMGSCANGGGYY 191
YDMDRFG+VFR +PRQ+DV+IVAGT+TNKMAPALRK YD MPEPR+VVSMGSCANGGGYY
Sbjct: 108 YDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYY 167
Query: 192 HYTYSTVRGCDRIVPVDIYVPG----CPPTAE 219
HY+YS VRGCDRIVPVDIY+PG PPT E
Sbjct: 168 HYSYSVVRGCDRIVPVDIYIPGRAGTAPPTRE 199
>AF060512-1|AAG43130.1| 214|Homo sapiens My017 protein protein.
Length = 214
Score = 169 bits (411), Expect = 8e-42
Identities = 92/176 (52%), Positives = 115/176 (65%), Gaps = 10/176 (5%)
Query: 72 PKLGENREYSPFHEPGQSTAEWVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPR 131
P L + R +P +P S E+VVA+ DD++NW RR+S+WP+TFGLACCA+EMMH A PR
Sbjct: 44 PALPKARAVAP--KPS-SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPR 100
Query: 132 YDMDRFGMVFRGTPRQTDVIIVAGTVTNKMAPALRKTYDLMPEPRWVVSM----GSCANG 187
YDMDRFG+VFR +PRQ+DV+IVAGT+TNKMAPALRK+ P P ++ G
Sbjct: 101 YDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKS---PPRPDAGAALRGLHGELRQR 157
Query: 188 GGYYHYTYSTVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKIKRMRVVQVWYR 243
G G P P TAEALLYG+LQLQ+KIKR R +Q+WYR
Sbjct: 158 GRLLPLFLLGGEGLRPHRARGHLHPRLPTTAEALLYGILQLQRKIKRERRLQIWYR 213
>AK128713-1|BAC87587.1| 155|Homo sapiens C 1.6.5.3). protein.
Length = 155
Score = 140 bits (340), Expect = 3e-33
Identities = 64/96 (66%), Positives = 80/96 (83%), Gaps = 3/96 (3%)
Query: 72 PKLGENREYSPFHEPGQSTAEWVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPR 131
P L + R +P +P S E+VVA+ DD++NW RR+S+WP+TFGLACCA+EMMH A PR
Sbjct: 51 PALPKARAVAP--KPS-SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPR 107
Query: 132 YDMDRFGMVFRGTPRQTDVIIVAGTVTNKMAPALRK 167
YDMDRFG+VFR +PRQ+DV+IVAGT+TNKMAPALRK
Sbjct: 108 YDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRK 143
>Y08421-1|CAA69698.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha4 subunit precursor protein.
Length = 627
Score = 31.5 bits (68), Expect = 2.8
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 62 PVVPPHGNKAPKLGENREYSPFH--EPGQSTAEWVVARADDILNWGRRNSVWPLTFGLAC 119
P PPHG +AP L + R S H PG++ V R+ I R+ P G A
Sbjct: 448 PCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADGQAA 507
Query: 120 CAL 122
AL
Sbjct: 508 GAL 510
>X89741-1|CAA61893.1| 627|Homo sapiens neuronal acetylcholine
receptor alpha-4 subunit protein.
Length = 627
Score = 31.5 bits (68), Expect = 2.8
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 62 PVVPPHGNKAPKLGENREYSPFH--EPGQSTAEWVVARADDILNWGRRNSVWPLTFGLAC 119
P PPHG +AP L + R S H PG++ V R+ I R+ P G A
Sbjct: 448 PCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADGQAA 507
Query: 120 CAL 122
AL
Sbjct: 508 GAL 510
>X87629-1|CAA60959.1| 602|Homo sapiens nicotinic acetylcholine
receptor protein.
Length = 602
Score = 31.5 bits (68), Expect = 2.8
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 62 PVVPPHGNKAPKLGENREYSPFH--EPGQSTAEWVVARADDILNWGRRNSVWPLTFGLAC 119
P PPHG +AP L + R S H PG++ V R+ I R+ P G A
Sbjct: 423 PCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADGQAA 482
Query: 120 CAL 122
AL
Sbjct: 483 GAL 485
>U62433-1|AAB40111.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha4 subunit precursor protein.
Length = 627
Score = 31.5 bits (68), Expect = 2.8
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 62 PVVPPHGNKAPKLGENREYSPFH--EPGQSTAEWVVARADDILNWGRRNSVWPLTFGLAC 119
P PPHG +AP L + R S H PG++ V R+ I R+ P G A
Sbjct: 448 PCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADGQAA 507
Query: 120 CAL 122
AL
Sbjct: 508 GAL 510
>L35901-1|AAA64743.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha 4 subunit protein.
Length = 627
Score = 31.5 bits (68), Expect = 2.8
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 62 PVVPPHGNKAPKLGENREYSPFH--EPGQSTAEWVVARADDILNWGRRNSVWPLTFGLAC 119
P PPHG +AP L + R S H PG++ V R+ I R+ P G A
Sbjct: 448 PCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADGQAA 507
Query: 120 CAL 122
AL
Sbjct: 508 GAL 510
>DQ093071-1|AAY88737.1| 627|Homo sapiens cholinergic receptor,
nicotinic, alpha polypeptide 4 protein.
Length = 627
Score = 31.5 bits (68), Expect = 2.8
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 62 PVVPPHGNKAPKLGENREYSPFH--EPGQSTAEWVVARADDILNWGRRNSVWPLTFGLAC 119
P PPHG +AP L + R S H PG++ V R+ I R+ P G A
Sbjct: 448 PCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADGQAA 507
Query: 120 CAL 122
AL
Sbjct: 508 GAL 510
>BC096293-1|AAH96293.1| 451|Homo sapiens CHRNA4 protein protein.
Length = 451
Score = 31.5 bits (68), Expect = 2.8
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 62 PVVPPHGNKAPKLGENREYSPFH--EPGQSTAEWVVARADDILNWGRRNSVWPLTFGLAC 119
P PPHG +AP L + R S H PG++ V R+ I R+ P G A
Sbjct: 272 PCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADGQAA 331
Query: 120 CAL 122
AL
Sbjct: 332 GAL 334
>BC096292-1|AAH96292.1| 451|Homo sapiens CHRNA4 protein protein.
Length = 451
Score = 31.5 bits (68), Expect = 2.8
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 62 PVVPPHGNKAPKLGENREYSPFH--EPGQSTAEWVVARADDILNWGRRNSVWPLTFGLAC 119
P PPHG +AP L + R S H PG++ V R+ I R+ P G A
Sbjct: 272 PCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADGQAA 331
Query: 120 CAL 122
AL
Sbjct: 332 GAL 334
>BC096291-1|AAH96291.1| 556|Homo sapiens CHRNA4 protein protein.
Length = 556
Score = 31.5 bits (68), Expect = 2.8
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 62 PVVPPHGNKAPKLGENREYSPFH--EPGQSTAEWVVARADDILNWGRRNSVWPLTFGLAC 119
P PPHG +AP L + R S H PG++ V R+ I R+ P G A
Sbjct: 377 PCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADGQAA 436
Query: 120 CAL 122
AL
Sbjct: 437 GAL 439
>BC096290-1|AAH96290.1| 627|Homo sapiens cholinergic receptor,
nicotinic, alpha 4 protein.
Length = 627
Score = 31.5 bits (68), Expect = 2.8
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 62 PVVPPHGNKAPKLGENREYSPFH--EPGQSTAEWVVARADDILNWGRRNSVWPLTFGLAC 119
P PPHG +AP L + R S H PG++ V R+ I R+ P G A
Sbjct: 448 PCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADGQAA 507
Query: 120 CAL 122
AL
Sbjct: 508 GAL 510
>AL121827-20|CAC36119.1| 627|Homo sapiens cholinergic receptor,
nicotinic, alpha 4 protein.
Length = 627
Score = 31.5 bits (68), Expect = 2.8
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 62 PVVPPHGNKAPKLGENREYSPFH--EPGQSTAEWVVARADDILNWGRRNSVWPLTFGLAC 119
P PPHG +AP L + R S H PG++ V R+ I R+ P G A
Sbjct: 448 PCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADGQAA 507
Query: 120 CAL 122
AL
Sbjct: 508 GAL 510
>AK127759-1|BAC87117.1| 294|Homo sapiens r (EC 1.6.5.3). protein.
Length = 294
Score = 31.5 bits (68), Expect = 2.8
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 72 PKLGENREYSPFHEPGQSTAEWVVARADDILNWGRRNS 109
P L + R +P +P S E+VVA+ DD++NW RR S
Sbjct: 44 PALPKARAVAP--KPS-SRGEYVVAKLDDLVNWARRVS 78
>AB209359-1|BAD92596.1| 533|Homo sapiens cholinergic receptor,
nicotinic, alpha polypeptide 4 precursor variant
protein.
Length = 533
Score = 31.5 bits (68), Expect = 2.8
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 62 PVVPPHGNKAPKLGENREYSPFH--EPGQSTAEWVVARADDILNWGRRNSVWPLTFGLAC 119
P PPHG +AP L + R S H PG++ V R+ I R+ P G A
Sbjct: 354 PCRPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADGQAA 413
Query: 120 CAL 122
AL
Sbjct: 414 GAL 416
>AK026727-1|BAB15538.1| 168|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23074 fis, clone LNG05744. ).
Length = 168
Score = 29.9 bits (64), Expect = 8.5
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 75 GENREYSPFHEPGQSTAEWVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPRYDM 134
G N +S + T W+V + +GR++ +W + C EM P M
Sbjct: 76 GLNGTHSDMLKSMHGTPYWMVPEVINESGYGRKSDIW----SIGCTVFEMATGKPPLASM 131
Query: 135 DRFGMVF 141
DR +F
Sbjct: 132 DRMAAMF 138
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.324 0.139 0.452
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,319,067
Number of Sequences: 224733
Number of extensions: 1718314
Number of successful extensions: 3479
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3468
Number of HSP's gapped (non-prelim): 24
length of query: 244
length of database: 73,234,838
effective HSP length: 88
effective length of query: 156
effective length of database: 53,458,334
effective search space: 8339500104
effective search space used: 8339500104
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 64 (29.9 bits)
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