GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005137-TA|BGIBMGA005137-PA|IPR006138|NADH dehydrogenase
(ubiquinone), 20 kDa subunit, IPR006137|NADH ubiquinone
oxidoreductase, 20 kDa subunit
         (244 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      29   0.052
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   2.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.8  

>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 157 VTNKMAPALRKTYDLMPEPRWVVSM 181
           V+N M P   ++ DL+PEPR+++ +
Sbjct: 33  VSNDMQPLEARSADLVPEPRYIIDV 57


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 157 VTNKMAPALRKTYDLMPEPRWVVSM 181
           V+N       ++ DL+PEPR+++ +
Sbjct: 33  VSNDRQSLEARSADLVPEPRYIIDV 57


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 23  LQYIAVLNRDVWNRDVAVF 41
           + YI V + D+W  D++V+
Sbjct: 114 INYIYVKSDDIWVPDISVY 132


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 179 VSMGSCANGGG 189
           V++G CA GGG
Sbjct: 4   VALGRCAGGGG 14


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 179 VSMGSCANGGG 189
           V++G CA GGG
Sbjct: 4   VALGRCAGGGG 14


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 179 VSMGSCANGGG 189
           V++G CA GGG
Sbjct: 4   VALGRCAGGGG 14


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 179 VSMGSCANGGG 189
           V++G CA GGG
Sbjct: 4   VALGRCAGGGG 14


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.452 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,489
Number of Sequences: 429
Number of extensions: 3571
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 7
length of query: 244
length of database: 140,377
effective HSP length: 56
effective length of query: 188
effective length of database: 116,353
effective search space: 21874364
effective search space used: 21874364
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 43 (21.4 bits)