GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005136-TA|BGIBMGA005136-PA|undefined
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.3  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   3.1  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    27   4.1  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   9.4  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    25   9.4  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 43  FVHFNSCQWAAHYPELREACTKNNLFLEKEPFKYKYKYIESVLQVGPTCGLVALSMLVD 101
           F H +  +    + +LREA     + L+K+PF      +E ++    T     L++ +D
Sbjct: 139 FKHMSKAKATKRHKKLREAINNVQIELQKQPFLLPEVILEPLVMACQTNSTTLLTITLD 197


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 204  IDNPTESFELDANNIYVL--CKHGKSKYLAIWKLADLDSSNKNLKEFSPKKGTDGSTYVL 261
            I  PT+S+E     IY    C+ G+S  L +W    +    +  +E   K    G T++ 
Sbjct: 2047 ISTPTKSYETSVPGIYAAGDCRRGQS--LVVW---GIQEGRQCAREIDLK--FQGKTFLP 2099

Query: 262  PDGGI 266
             DGG+
Sbjct: 2100 GDGGL 2104


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 112 IAKLSGYTGNGEMCSCKNMVKLVKEVFNLAGINNVTF 148
           I   +G+ G G + SC+ +  L    ++  GIN++ F
Sbjct: 310 ILATAGWDGRGRVYSCQTLAPLAVLKYHSDGINSLAF 346


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 74  FKYKYKYIESVLQVGPTCGLVALSMLVDRKVTAN-EMLNIAKLSGYTGNGEMCSCKNM 130
           F  K K  E   QVGP     A ++ ++  +    ++    KL+GY G G+ C   +M
Sbjct: 153 FLPKRKDFEKKSQVGPVLSSNASTVRMNTIIDYQPDVCKDYKLTGYCGYGDTCKFLHM 210


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 121 NGEMCSCKNMVKLVKEVFNLAGINNVTFELKIGNLFSSETIELLTDGAIILVPY 174
           N  + S    +KL K+ F    + N   E+K+G+  +S   EL  +G +    Y
Sbjct: 325 NKAVSSSTTEIKLKKKKFGKHRLPNNPLEIKLGDELTSSLRELKPEGNLFADRY 378


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,298,131
Number of Sequences: 5004
Number of extensions: 56005
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 6
length of query: 285
length of database: 2,362,478
effective HSP length: 72
effective length of query: 213
effective length of database: 2,002,190
effective search space: 426466470
effective search space used: 426466470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)