GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005136-TA|BGIBMGA005136-PA|undefined
         (285 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0339 + 7452967-7453068,7453281-7453339,7453889-7454701,745...    30   2.4  
07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547     30   2.4  
01_03_0100 + 12550646-12550650,12550750-12550846,12551299-125517...    30   2.4  
12_02_0329 + 17585046-17585561                                         29   5.6  
06_03_0735 - 23987349-23989196                                         29   5.6  
02_01_0260 - 1723476-1723502,1724051-1724148,1724276-1724339,172...    28   9.9  

>09_02_0339 +
           7452967-7453068,7453281-7453339,7453889-7454701,
           7455123-7455498,7455978-7456019
          Length = 463

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 185 SPCLRNGHTAHWALICGILIDNPTESFELDANNIYVLCKHGKSKYLAIWKLADLDSSNKN 244
           +P  + G+   W L   +L    T+ F +D  N+   C     +YL +W LA  DSS   
Sbjct: 289 NPANKGGYGESWTLQTFVLNGEFTDVFPMD-ENLPPTCLVYLYRYLEVWHLA-FDSSKDQ 346

Query: 245 LKEFSPKK 252
           +    P K
Sbjct: 347 VVFVRPAK 354


>07_03_1745 - 29176951-29178901,29178960-29179069,29179536-29179547
          Length = 690

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 78  YKYIESVLQVGPTCGLVALSMLVD---RKVTANEMLNIAKLSGYTG 120
           + ++   ++VG  C +V+ ++L+D   R    N  LN+ K  GY G
Sbjct: 485 FAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKG 530


>01_03_0100 +
           12550646-12550650,12550750-12550846,12551299-12551712,
           12552134-12552556
          Length = 312

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 233 WKLADLDSSNKNLKEFSPKKGTDGSTYVLPDGGIGGEDGLCN 274
           W++ DL  + +NL  ++  KG D S  +    G    D   N
Sbjct: 15  WEIGDLPFAKENLNYYAEMKGCDASVLIFSPNGTAERDAAPN 56


>12_02_0329 + 17585046-17585561
          Length = 171

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 249 SPKKGTDGSTYVLPDGGIGGEDGLCNQY 276
           +PK GT GST+  P+GG      LC  +
Sbjct: 103 APKSGTAGSTHPGPEGGRSAAAWLCRSH 130


>06_03_0735 - 23987349-23989196
          Length = 615

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 83  SVLQVGPTCGLVALSMLV-DRKVTANEMLNIAKLSGYTGNGE 123
           S L +   CGL+  +  V DR    NE+   A L GY  NGE
Sbjct: 285 STLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGE 326


>02_01_0260 -
           1723476-1723502,1724051-1724148,1724276-1724339,
           1724458-1724563,1724641-1724677,1724763-1724856,
           1725452-1725568,1726450-1726714,1727329-1727396,
           1727478-1727642
          Length = 346

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/19 (57%), Positives = 11/19 (57%)

Query: 51  WAAHYPELREACTKNNLFL 69
           W  H P L  ACTKNN  L
Sbjct: 312 WCPHNPNLLLACTKNNKIL 330


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,069,691
Number of Sequences: 37544
Number of extensions: 339189
Number of successful extensions: 670
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 6
length of query: 285
length of database: 14,793,348
effective HSP length: 81
effective length of query: 204
effective length of database: 11,752,284
effective search space: 2397465936
effective search space used: 2397465936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)