GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005136-TA|BGIBMGA005136-PA|undefined
         (285 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 5/31 (16%)

Query: 246 KEFSPKKGTDGSTYVLPDG-----GIGGEDG 271
           +EF P    DG   VLP G      +G EDG
Sbjct: 145 EEFVPGDDYDGKYLVLPSGELHIRDVGPEDG 175


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 129 NMVKLVKEVFNLAGINNVTFELKIGNL 155
           N  KLV+ V N + +  V  +LK+  L
Sbjct: 39  NYNKLVRPVVNTSDVLRVCIKLKLSQL 65


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 129 NMVKLVKEVFNLAGINNVTFELKIGNL 155
           N  KLV+ V N + +  V  +LK+  L
Sbjct: 39  NYNKLVRPVVNTSDVLRVCIKLKLSQL 65


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)

Query: 67  LFLEKEPFKYKYKYIESVLQVGPTCGL 93
           L L   P    Y +IE  LQ GP   L
Sbjct: 415 LQLGNAPPMLLYSFIEQTLQPGPAVSL 441


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)

Query: 67  LFLEKEPFKYKYKYIESVLQVGPTCGL 93
           L L   P    Y +IE  LQ GP   L
Sbjct: 415 LQLGNAPPMLLYSFIEQTLQPGPAVSL 441


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,242
Number of Sequences: 429
Number of extensions: 3697
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 285
length of database: 140,377
effective HSP length: 57
effective length of query: 228
effective length of database: 115,924
effective search space: 26430672
effective search space used: 26430672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)