GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005135-TA|BGIBMGA005135-PA|undefined
         (376 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.80 
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              24   2.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   2.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   9.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.80
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 268 EAEPFINKLRKTTATPSTTKVNKGKQLNSNWRQKHEEFI 306
           EA   ++KL KT  TP+ + +    +L  N +  +E+F+
Sbjct: 526 EAANIMSKLPKTVRTPTDSYIRSFFELLQNPKVSNEQFL 564


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 85  HEDDISAVKHSLPQSNGEIGTDKDEPDKVENNNDLLENE 123
           HE+  + ++   P   GE GT +   D+V N N  +E+E
Sbjct: 19  HEELKTGIQTLQPICVGETGTSQKIIDEVYNGNVNVEDE 57


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 11/53 (20%), Positives = 26/53 (49%)

Query: 13  KSYPLQPIHNTERTNRKTLPNGYAKVSNSTTSTRVIVEKRSQKTHTTVSSHSV 65
           KSY L+   N +R  + +     ++  ++ +ST+  + ++S  T   + +  V
Sbjct: 204 KSYVLEGPRNGKRKRKSSTIENESETESNASSTKTKMRRKSGATFEEIQNQRV 256


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 295 NSNWRQKHEEFIQAIRAAKQVQAHLNAGGKLS 326
           N +  +  E F Q + A K  + ++N+G K+S
Sbjct: 526 NGDPPENGEAFAQNLYAMKMNETYINSGNKIS 557


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 8/32 (25%), Positives = 19/32 (59%)

Query: 45 TRVIVEKRSQKTHTTVSSHSVKKQQKIDNLVN 76
          T V  +++  K  T ++  ++  + K+DNL++
Sbjct: 14 TPVFTKQKKVKEDTELNLQTIFNEDKLDNLMD 45


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.125    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,495
Number of Sequences: 429
Number of extensions: 3687
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 376
length of database: 140,377
effective HSP length: 59
effective length of query: 317
effective length of database: 115,066
effective search space: 36475922
effective search space used: 36475922
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)