GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005133-TA|BGIBMGA005133-PA|undefined
         (80 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC109295-1|AAI09296.1|  793|Homo sapiens LOC146177 protein protein.    31   0.77 
AK128606-1|BAC87526.1|  808|Homo sapiens protein ( Homo sapiens ...    31   0.77 

>BC109295-1|AAI09296.1|  793|Homo sapiens LOC146177 protein protein.
          Length = 793

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 7   ISQIPDASGKCLATQKYLVKESPEMLAIATWTGQV-PKRPALPLGAKVS 54
           ++ + + SGK L +   L KE P+ L + +   ++ P RP +PLGA++S
Sbjct: 327 MASLKNHSGKVLGSSA-LPKEKPKTLQLRSQPKKLCPPRPTVPLGARMS 374


>AK128606-1|BAC87526.1|  808|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46765 fis, clone TRACH3024512. ).
          Length = 808

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 7   ISQIPDASGKCLATQKYLVKESPEMLAIATWTGQV-PKRPALPLGAKVS 54
           ++ + + SGK L +   L KE P+ L + +   ++ P RP +PLGA++S
Sbjct: 342 MASLKNHSGKVLGSSA-LPKEKPKTLQLRSQPKKLCPPRPTVPLGARMS 389


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.129    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,909,131
Number of Sequences: 224733
Number of extensions: 403453
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 2
length of query: 80
length of database: 73,234,838
effective HSP length: 58
effective length of query: 22
effective length of database: 60,200,324
effective search space: 1324407128
effective search space used: 1324407128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)