GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005132-TA|BGIBMGA005132-PA|undefined
         (200 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   0.49 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.0  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 101 KQLDLSNKREFDLQTKYLNALFDK-----EKMVALLESKTKLVQKLKNELNVMKRVLK 153
           K LDL ++ E+DLQT  ++  +       EK  ++ +  +  + K+KN+    K +L+
Sbjct: 284 KVLDLRSQLEYDLQTSIMSRHYSTRAIVIEKGQSIWDYDSTYIPKVKNKKAGSKHLLQ 341


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 162 VPEFPESSEVSRRFPPVGAVATQPLLPPLA 191
           VP  P  +E  + FPP+G  A + +   +A
Sbjct: 405 VPSKPMCAEAFQEFPPLGRFAVRDMRQTVA 434


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 67  LHEEMNKIKSELNKANDSIGKMRE 90
           L   M+K+KS + +AN ++   RE
Sbjct: 435 LRRRMDKLKSSIEEANLAVSAERE 458


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 7   SVDHPICSSSVKNKKHTSSMDRSSSVNSYEVFRNN 41
           S +  I SS   N K+++  + +++ N+Y  + NN
Sbjct: 309 SKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNN 343


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 50  KEIANKKNDQTGSTVKSLHEEMNKIKSELNKANDS 84
           K+  N++ND   +  K      N  K   N+ ND+
Sbjct: 454 KQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDN 488


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.126    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,696
Number of Sequences: 429
Number of extensions: 2014
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 200
length of database: 140,377
effective HSP length: 55
effective length of query: 145
effective length of database: 116,782
effective search space: 16933390
effective search space used: 16933390
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)