GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005129-TA|BGIBMGA005129-PA|IPR013273|ADAM-TS,
IPR002223|Proteinase inhibitor I2, Kunitz metazoa,
IPR000884|Thrombospondin, type I, IPR010294|ADAM-TS Spacer 1
         (2102 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    33   0.57 
SPBC19C2.07 |fba1||fructose-bisphosphate aldolase Fba1|Schizosac...    29   9.2  

>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 1434 TGPDREGCGCHTYQFGCCPDGVTISKGPGLQGCRCEQSQYGCCGDGETHATGPNLGGCDC 1493
            + P  +   C   +  CC      SK P    C C Q + GCC   +T         C C
Sbjct: 231  SSPSEKPSCCSQEKKSCCS-----SKKPS---C-CSQEKKGCCSTEKTSCCSQEKKSC-C 280

Query: 1494 STSKYGCCPDGQT 1506
            ++ K  CC +G++
Sbjct: 281  TSEKPSCCSNGKS 293



 Score = 32.3 bits (70), Expect = 0.75
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 1166 CEKVRTCKETRFGCCSDGVSAALGPEEKGCPPSLCAESLFGCCLSDNKTAAGGNDQEGCP 1225
            C K  +    +  CCS    +    ++    PS C++   GCC S  KT+    +++ C 
Sbjct: 226  CSKKDSSPSEKPSCCSQEKKSCCSSKK----PSCCSQEKKGCC-STEKTSCCSQEKKSC- 279

Query: 1226 PMPPACKLAPYGCCADGET 1244
                 C      CC++G++
Sbjct: 280  -----CTSEKPSCCSNGKS 293



 Score = 30.3 bits (65), Expect = 3.0
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 1143 CATTKFGCCPDKRTAASGPFDEGC---EKVRTCKETRFGCCS 1181
            C+  K  CC  K+ +      +GC   EK   C + +  CC+
Sbjct: 240  CSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCT 281



 Score = 29.1 bits (62), Expect = 7.0
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 1321 KFGCCPDNHTPAEDAEMKGCPLTCATSRFGCCPDDVTPAHGPDGEGCCLIYPFGCC 1376
            K  CC         ++   C   C+  + GCC  + T     + + CC      CC
Sbjct: 236  KPSCCSQEKKSCCSSKKPSC---CSQEKKGCCSTEKTSCCSQEKKSCCTSEKPSCC 288



 Score = 28.7 bits (61), Expect = 9.2
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 1/69 (1%)

Query: 1333 EDAEMKGCPLTCATSRFGCCPDDVTPAHGPDGEGCCLIYPFGCCPDNFKVADGPNFAGCD 1392
            +D+     P  C+  +  CC          + +GCC      CC    K         C 
Sbjct: 229  KDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCTSEKPSC- 287

Query: 1393 CHYGRFGCC 1401
            C  G+   C
Sbjct: 288  CSNGKSTVC 296


>SPBC19C2.07 |fba1||fructose-bisphosphate aldolase
            Fba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 1767 PAETGECANYEEKWFYDTSEKRCRQFYYGGCGGNENKFNSQIEC 1810
            PA  G+   Y ++    T++K     ++GG G + N+F + I+C
Sbjct: 237  PALLGQHQAYVKEQLKTTNDKPVFFVFHGGSGSSVNEFRTGIKC 280


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,868,398
Number of Sequences: 5004
Number of extensions: 392024
Number of successful extensions: 578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 7
length of query: 2102
length of database: 2,362,478
effective HSP length: 84
effective length of query: 2018
effective length of database: 1,942,142
effective search space: 3919242556
effective search space used: 3919242556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)