GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005128-TA|BGIBMGA005128-PA|undefined
         (91 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    26   0.78 
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   1.4  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    25   2.4  
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo...    24   4.1  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    24   4.1  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    23   5.5  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    23   9.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    23   9.6  

>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 18/56 (32%), Positives = 23/56 (41%)

Query: 8   ILSRVSDVGCTNIHSGTTTISSKHPLPLLAGTVRPSKIATIVWESAQKKERIQILK 63
           ILS   +V  T +H G   I +    P L  +  P   A   W     KER+  LK
Sbjct: 175 ILSDDINVLATIVHEGNKEIVAVEQGPFLGTSFHPELTADNRWHEWWVKERVLPLK 230


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 27  ISSKHPLPLLAGTVRPSKIATIVWESAQKKERIQILKGSIRLLTVHLAEVSLAARFKRQQ 86
           + S+   PL  G   P K   ++  S  +  R+++ K   +   VH  E++++   KR +
Sbjct: 102 LHSESLTPLSFGHTIPKKKPLLMTASVSEDSRVRVSKRQFKSKVVH-PEIAISIA-KRHK 159

Query: 87  PK 88
           PK
Sbjct: 160 PK 161


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 37  AGTVRPSKIATIVWESAQKKERIQILKGSI 66
           +G V P K    ++E A K   + ++KG +
Sbjct: 135 SGQVHPYKFCHAIYEEASKVANVTLVKGHV 164


>SPCC1442.13c |||RNA-binding protein, G-pathc
           type|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)

Query: 41  RPSKIATIVWESAQKKERIQILKGSI 66
           R SK+  +  +  +K++R+QI +GS+
Sbjct: 99  RKSKLVEMTPKGLKKRKRVQIQEGSV 124


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 30  KH-PLPLLAGTVRPSKIATIVWESAQKKERIQILKGSIR 67
           KH  +P+  G + P + A +V+E   + E+I+I K  ++
Sbjct: 621 KHRAIPVTTGIIVPEESAQMVYEEFLECEKIRIEKQQMK 659


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 39  TVRPSKIATIVWESAQKKERIQILKGSIRLLTVHLAEV 76
           TV  + IA+I  E A+ K  + I+K  I  +   +AE+
Sbjct: 197 TVMKNDIASIKGEMAEMKGEMTIMKSDIDSVKGEMAEM 234


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 16  GCTNIHSGTTTISSKHPLPLLAGTVRPSKIATIVWES 52
           GC  I      +S +    L+   +R +K  T+ WE+
Sbjct: 498 GCRQIEEIVLKLSPERIQELIEIFIRATKFETLFWET 534


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 27   ISSKHPLPLLAGTVRPSKIATIVWES 52
            IS  H LPLL   ++P ++    W S
Sbjct: 1696 ISQLHDLPLLNINIKPFQVDLNDWSS 1721


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 345,609
Number of Sequences: 5004
Number of extensions: 10312
Number of successful extensions: 30
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 8
length of query: 91
length of database: 2,362,478
effective HSP length: 61
effective length of query: 30
effective length of database: 2,057,234
effective search space: 61717020
effective search space used: 61717020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)