GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005128-TA|BGIBMGA005128-PA|undefined
         (91 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC132854-1|AAI32855.1|  294|Homo sapiens chromosome 8 open readi...    29   1.7  
BC132852-1|AAI32853.1|  294|Homo sapiens chromosome 8 open readi...    29   1.7  
BC065837-1|AAH65837.1|  303|Homo sapiens chromosome 8 open readi...    29   1.7  
BC001586-1|AAH01586.1|  326|Homo sapiens F-box and leucine-rich ...    27   6.9  
AK027004-1|BAB15622.1|  273|Homo sapiens protein ( Homo sapiens ...    27   6.9  
AK000195-1|BAA91002.1|  326|Homo sapiens protein ( Homo sapiens ...    27   6.9  

>BC132854-1|AAI32855.1|  294|Homo sapiens chromosome 8 open reading
           frame 74 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 31  HPLPLLAGT-----VRPSKIATIVWESAQKKERIQILKGSIRLLTVHLAEVSLAA 80
           HPLPL  G      +   ++AT+    AQK+  + +LK ++RL   +  + + AA
Sbjct: 149 HPLPLAEGMDRDLWIHEQQVATLTEAEAQKRADVLLLKEALRLERENSLQKAFAA 203


>BC132852-1|AAI32853.1|  294|Homo sapiens chromosome 8 open reading
           frame 74 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 31  HPLPLLAGT-----VRPSKIATIVWESAQKKERIQILKGSIRLLTVHLAEVSLAA 80
           HPLPL  G      +   ++AT+    AQK+  + +LK ++RL   +  + + AA
Sbjct: 149 HPLPLAEGMDRDLWIHEQQVATLTEAEAQKRADVLLLKEALRLERENSLQKAFAA 203


>BC065837-1|AAH65837.1|  303|Homo sapiens chromosome 8 open reading
           frame 74 protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 31  HPLPLLAGT-----VRPSKIATIVWESAQKKERIQILKGSIRLLTVHLAEVSLAA 80
           HPLPL  G      +   ++AT+    AQK+  + +LK ++RL   +  + + AA
Sbjct: 158 HPLPLAEGMDRDLWIHEQQVATLTEAEAQKRADVLLLKEALRLERENSLQKAFAA 212


>BC001586-1|AAH01586.1|  326|Homo sapiens F-box and leucine-rich
           repeat protein 12 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 59  IQILKGSIRLLTVHLAEVSLAARFKRQQPKRLP 91
           I  L  ++R L +H  E+S+A   K+Q P  LP
Sbjct: 119 ITSLPSTLRTLELHSCEISMAWLHKQQDPTVLP 151


>AK027004-1|BAB15622.1|  273|Homo sapiens protein ( Homo sapiens
          cDNA: FLJ23351 fis, clone HEP14009. ).
          Length = 273

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 59 IQILKGSIRLLTVHLAEVSLAARFKRQQPKRLP 91
          I  L  ++R L +H  E+S+A   K+Q P  LP
Sbjct: 66 ITSLPSTLRTLELHSCEISMAWLHKQQDPTVLP 98


>AK000195-1|BAA91002.1|  326|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20188 fis, clone COLF0561. ).
          Length = 326

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 59  IQILKGSIRLLTVHLAEVSLAARFKRQQPKRLP 91
           I  L  ++R L +H  E+S+A   K+Q P  LP
Sbjct: 119 ITSLPSTLRTLELHSCEISMAWLHKQQDPTVLP 151


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,841,946
Number of Sequences: 224733
Number of extensions: 365204
Number of successful extensions: 627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 6
length of query: 91
length of database: 73,234,838
effective HSP length: 69
effective length of query: 22
effective length of database: 57,728,261
effective search space: 1270021742
effective search space used: 1270021742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)