GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005126-TA|BGIBMGA005126-PA|IPR002306|Tryptophanyl-tRNA
synthetase, class Ib, IPR002305|Aminoacyl-tRNA synthetase, class Ib
         (299 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/46 (19%), Positives = 22/46 (47%)

Query: 202 KINKYAFSGGQITVEEHREKGGNTDVDISYKYLVFFLEDDDKLAEI 247
           K+  + + G ++ +    EK G+  VD+      F++  +  + E+
Sbjct: 170 KLGSWTYDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWDILEV 215


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/46 (19%), Positives = 21/46 (45%)

Query: 202 KINKYAFSGGQITVEEHREKGGNTDVDISYKYLVFFLEDDDKLAEI 247
           K   + + G ++ +    EK G+  VD+      F++  +  + E+
Sbjct: 170 KFGSWTYDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWDILEV 215


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 182 SASDCNASIFLNDTPKQIKNKINKYAFSGGQITVEEHREKGGNTDVDISYKYLVFFLEDD 241
           S+ + N   F  D    I  K   + ++G Q+ ++  +++ G+  V        F+L  +
Sbjct: 156 SSCEINVEYFPFDEQSCIM-KFGSWTYNGAQVDLKHMKQEAGSNLVAKGIDLSDFYLSVE 214

Query: 242 DKLAEIKKS 250
             + E+  S
Sbjct: 215 WDILEVPAS 223


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.140    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,810
Number of Sequences: 429
Number of extensions: 3708
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 299
length of database: 140,377
effective HSP length: 57
effective length of query: 242
effective length of database: 115,924
effective search space: 28053608
effective search space used: 28053608
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)