GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005125-TA|BGIBMGA005125-PA|IPR001126|UMUC-like
DNA-repair protein
         (601 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   4.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   9.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 315 LVLVREDGRIPVSVRVTLRKKDAKRLSSHRESRQS 349
           L+ + +DG I  S+R+T++ K    L +    RQS
Sbjct: 141 LLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQS 175


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 110 EKLGMDENFIDVTSLVEEKLKNANLNDLIVMGQLYSEPSAECPC 153
           E L  DE+F+DVT   + +   A+   L      + E     PC
Sbjct: 23  ENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKSTPC 66


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,210
Number of Sequences: 429
Number of extensions: 5788
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 601
length of database: 140,377
effective HSP length: 62
effective length of query: 539
effective length of database: 113,779
effective search space: 61326881
effective search space used: 61326881
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)