GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005124-TA|BGIBMGA005124-PA|IPR002554|Protein phosphatase
2A, regulatory B subunit, B56
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...   511   e-145
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...   483   e-137
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    33   0.12 
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    29   1.5  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     28   3.5  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    28   4.6  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   6.0  

>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score =  511 bits (1260), Expect = e-145
 Identities = 234/391 (59%), Positives = 304/391 (77%), Gaps = 1/391 (0%)

Query: 158 NIDRESLMEQLPLLKDAPAAEKEQLFVQKLRQCCLLFDFADEPLSDLKWKEVKRAALLEM 217
           +I     + +LP   D P  +   L ++KL QCC++FDF D P +DL  KEVKR AL ++
Sbjct: 97  HISENRNLVRLPSFTDVPVNKWHSLALEKLEQCCVVFDFND-PSTDLYGKEVKREALQDL 155

Query: 218 VEYVTSQRGVITDSIYPEAVNMFAINLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQL 277
           ++ ++ ++  I +S+YP  V+MFA+N+FR LPP SNP G   D EEDEP LE AWPHL L
Sbjct: 156 IDLISVRKEAIDESLYPSIVHMFAVNVFRPLPPPSNPPGEIMDLEEDEPALEVAWPHLHL 215

Query: 278 VYELFLRLLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLVL 337
           VY+ FLR  ESP    ++AK YI+QKF+ +LL LFDSEDPRERDFLKTTLHRIYGKFL L
Sbjct: 216 VYDFFLRFFESPSLNTSVAKVYINQKFIRKLLVLFDSEDPRERDFLKTTLHRIYGKFLSL 275

Query: 338 RAYIRKQINNVFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKLFLLRVLLPLHK 397
           RA+IR+ INN+F +F+YE E  NGIAELLEILGSIINGFALPLKEEHK+FL RVL+PLHK
Sbjct: 276 RAFIRRSINNLFLQFVYENEQFNGIAELLEILGSIINGFALPLKEEHKIFLSRVLIPLHK 335

Query: 398 AKSLSVYHPQLAYCVVQFLEKDPSLTQPVVRALLKYWPKTHSPKEVMFLNEMEEILDVVE 457
           AKSL +Y+PQ+AY +VQF+EKD S+T+ VV  LL+YWPK +S KEV+FLNE+E+I++V+E
Sbjct: 336 AKSLPLYYPQIAYGIVQFVEKDSSVTEEVVLGLLRYWPKVNSSKEVLFLNEIEDIIEVME 395

Query: 458 PAEFQRIMDPLFKQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNATHILPVMFPALYR 517
           P+EF +I  PLF +LA  +SS +FQVAERALY++NN+Y + L+ +N   ILP+++PAL+ 
Sbjct: 396 PSEFLKIQVPLFHKLATSISSQNFQVAERALYFFNNDYFVHLVEENVDIILPIIYPALFE 455

Query: 518 NTKSHWNKTIHGLVYNALKLFMEMNQKLFDE 548
            +KSHWN+ IH +V N LKLFM++N  LFDE
Sbjct: 456 ISKSHWNRVIHSMVCNVLKLFMDINPSLFDE 486


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score =  483 bits (1191), Expect = e-137
 Identities = 215/389 (55%), Positives = 298/389 (76%), Gaps = 1/389 (0%)

Query: 159 IDRESLMEQLPLLKDAPAAEKEQLFVQKLRQCCLLFDFADEPLSDLKWKEVKRAALLEMV 218
           +  +  + +LP   D   +E+E+LF++KL QC ++FDF D P SDL  KE+KR ALL+M+
Sbjct: 199 VSEKRTLVRLPSFDDVHTSEREELFIKKLEQCNIIFDFND-PSSDLASKEIKREALLQMI 257

Query: 219 EYVTSQRGVITDSIYPEAVNMFAINLFRTLPPSSNPNGAEFDPEEDEPTLEAAWPHLQLV 278
           +YV+  RG+ + S++P  VN F++N+FR + P+ N   ++    +DEP LE AWPHL+ V
Sbjct: 258 DYVSENRGISSASLFPYVVNTFSLNVFRPISPALNDYSSDMFALDDEPFLEPAWPHLEEV 317

Query: 279 YELFLRLLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLVLR 338
           Y LF++ LESPDF+ + AK  +D++F  +LL LFD+EDPRER+ LKTTLHRIYGKFL LR
Sbjct: 318 YLLFIKFLESPDFRASKAKSLVDRRFFNRLLALFDTEDPRERELLKTTLHRIYGKFLNLR 377

Query: 339 AYIRKQINNVFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKLFLLRVLLPLHKA 398
           +YIRK +NNVF +FIYE E  +GIAELLEILGSIINGFA+PLKEEHK+FL +VL+PLH+ 
Sbjct: 378 SYIRKSMNNVFLQFIYEREKFHGIAELLEILGSIINGFAVPLKEEHKIFLSKVLIPLHQT 437

Query: 399 KSLSVYHPQLAYCVVQFLEKDPSLTQPVVRALLKYWPKTHSPKEVMFLNEMEEILDVVEP 458
           KS+ +YHPQL YC+VQF++KDPSLT+ V+  +LKYWP+ +S KE++FLNE+E+I +V+EP
Sbjct: 438 KSVFLYHPQLTYCIVQFIDKDPSLTKAVLTGILKYWPRINSFKELLFLNEIEDIFEVLEP 497

Query: 459 AEFQRIMDPLFKQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNATHILPVMFPALYRN 518
           +EF  IM PLF+QLA+ +SS HFQVAERAL  W+NEY  SL+S N   +LP+++P+LY+ 
Sbjct: 498 SEFVNIMSPLFQQLARSISSMHFQVAERALCLWSNEYFTSLVSQNVVTLLPIIYPSLYKT 557

Query: 519 TKSHWNKTIHGLVYNALKLFMEMNQKLFD 547
              HWN TI  +  N L++F++M+   F+
Sbjct: 558 ANEHWNSTIQAIACNVLQIFVDMDADFFN 586


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 403 VYHPQLAYCVVQFLEKDPSLTQPVVRALLKYWPKTHSPKEVMFLNEMEEILDVVEPAEFQ 462
           VY  + A  +++ L+K+PS+T P+V   LK   K    + +   N   E+   +E   F 
Sbjct: 715 VYGKEHAQQIIENLQKNPSVTIPIVLERLK--KKDREWRSLQ--NHWNELWHDIEEKNFY 770

Query: 463 RIMD---PLFKQLAKCVSSPHFQVAE 485
           R +D     FK + K  ++P F ++E
Sbjct: 771 RSLDHQGVSFKSVDKKSTTPKFLISE 796


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 253 NPNGAEFDPEEDEPTLEAAWPHLQLVYELFLRLLESPDFQPNIAKKYIDQK 303
           NP   +F  E+     ++   H      L + +   PDF P++++++I+ K
Sbjct: 229 NPKILDFTVEDASEAFDSLRDHCDYKRLLSMGIFSEPDFHPSLSRQWINSK 279


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 386 LFLLRVLLPLHKAKSLSVYHPQLAYCVVQFLEKDPSLTQPVVRALLKYWP 435
           L   R+++   KA  +S+    L YC VQF+E   +L     R+L K++P
Sbjct: 150 LLCFRIIIS-QKAALVSIGISTLYYCFVQFMEVKSALIS-YDRSLFKFYP 197


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 11/146 (7%)

Query: 362 IAELLEILGSIINGFALPLKEEHKLFLLRVLLPLHKAKSLSVYHPQLAYCVVQFLEKDPS 421
           I+ +  IL  +ING +LP    H   ++R ++P    +   + +     C       D +
Sbjct: 33  ISAMKTILRVVINGDSLPSILMH---VIRFVMPSRNKELKKLLYYYWEVCPKY--NNDGT 87

Query: 422 LTQPVVRALLKYWPKTHSPKEVMFLNEMEEILDVVEPAEFQRIMDPLFKQLAKCVSSPHF 481
           + Q ++ A   +      P E +    +  +  + EP     ++DPL   + +C+   H 
Sbjct: 88  MKQEMILACNSFRNDLQHPNEFIRGATLRFLCKLKEP----ELLDPLIPTVRQCLEHRHA 143

Query: 482 QVAERALYYWNNEYIMS--LISDNAT 505
            V + A+    + Y +S  LI D A+
Sbjct: 144 YVRKNAILAVFSIYQVSNHLIPDAAS 169


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/57 (33%), Positives = 27/57 (47%)

Query: 285  LLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLVLRAYI 341
            LL + D    I+   ID   + +   +FD E+  E DF++     I GK L LR  I
Sbjct: 1190 LLTTDDENAPISSVLIDFDALYRRTCVFDEENSEESDFVRWVPTDISGKPLCLRGRI 1246


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,879
Number of Sequences: 5004
Number of extensions: 110129
Number of successful extensions: 312
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 8
length of query: 638
length of database: 2,362,478
effective HSP length: 77
effective length of query: 561
effective length of database: 1,977,170
effective search space: 1109192370
effective search space used: 1109192370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)