GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005123-TA|BGIBMGA005123-PA|IPR000048|IQ
calmodulin-binding region
         (268 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.6  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 169 KWMSKYDRDMEGID 182
           +W+ +YDR++E  D
Sbjct: 293 QWLREYDRELEDFD 306


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 82  NAITDLYVEMTLNKNYKTLTSFLNSIF 108
           +A+T L V  T N +Y +L S    +F
Sbjct: 255 DALTGLTVLRTFNASYNSLDSLPEGLF 281


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 133 KQIRQLRNHIKTVLYDNEVTIDSLKSQVEETLEKIEKWM 171
           K +R +  HIK    DNEV I+  K  V   L+++  W+
Sbjct: 452 KGVRFIAQHIKNADKDNEV-IEDWKF-VAMVLDRLFLWV 488


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,638
Number of Sequences: 429
Number of extensions: 2896
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 268
length of database: 140,377
effective HSP length: 57
effective length of query: 211
effective length of database: 115,924
effective search space: 24459964
effective search space used: 24459964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)