GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005122-TA|BGIBMGA005122-PA|IPR010978|tRNA-binding arm,
IPR000048|IQ calmodulin-binding region
         (151 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   9.5  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    20   9.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           20   9.5  

>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 74  FDKRVELEETLEKHQKLIQNWQKF 97
           F K V  +      +KLI NW  +
Sbjct: 310 FIKNVSRDSNSSDFKKLIDNWMTY 333


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 74  FDKRVELEETLEKHQKLIQNWQKF 97
           F K V  +      +KL+ NW  +
Sbjct: 310 FIKNVSRDSNSSDFKKLVDNWMTY 333


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 79  ELEETLEKHQKLIQNWQKFKDDREEARLFEEKMNNAAV 116
           +++ET  KH   + + + F  D E+A   + K+N   V
Sbjct: 399 KIDETTLKHLIDVASDRFFITDGEKAARMQAKVNRQPV 436


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 79  ELEETLEKHQKLIQNWQKFKDDREEARLFEEKMNNAAV 116
           +++ET  KH   + + + F  D E+A   + K+N   V
Sbjct: 399 KIDETTLKHLIDVASDRFFITDGEKAARMQAKVNRQPV 436


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,003
Number of Sequences: 429
Number of extensions: 1360
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 151
length of database: 140,377
effective HSP length: 53
effective length of query: 98
effective length of database: 117,640
effective search space: 11528720
effective search space used: 11528720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)