GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005121-TA|BGIBMGA005121-PA|IPR005123|2OG-Fe(II)
oxygenase
         (224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    32   0.059
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    28   1.3  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    27   2.2  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   3.9  
SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyc...    25   6.8  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   9.0  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.0  
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    25   9.0  

>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 32.3 bits (70), Expect = 0.059
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 82  YSTRYAITLWYFDAHEREEALRKYKERGQPSS 113
           +  R+  TL+  D ++ E+A+ KYK RG P+S
Sbjct: 193 WGRRFGYTLYLNDTNQLEDAVLKYKRRGGPTS 224


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 15/96 (15%)

Query: 9   GSHYVKHVDNPNKDGRCITAIYYL---NLDWDVKRYGGLLRVFP--EGTNQVAD----IA 59
           G H + H D      RCI+ I YL   +  W  + YGG LR+FP  + +   AD    I 
Sbjct: 136 GCHLMNHDDVIGT--RCISYILYLVEPDEGWKPE-YGGALRLFPTLQPSFPAADFCHSIP 192

Query: 60  PIFDRMLFF-WSDRRNPHEV--LFAYSTRYAITLWY 92
           P ++++ FF      + H+V  ++    R AI+ W+
Sbjct: 193 PQWNQLSFFRVKPGHSFHDVEEVYVDKPRMAISGWF 228


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 155 NLKCTSYKLNKLNNDRLLFSDILIATYLGLSLLENWKVLTDRNNGL--ISIERNRLNLIE 212
           NL C S+ L +L       S   + ++ G+ +LEN ++L   NN +  +S      NL+E
Sbjct: 209 NLACLSHCLREL-----YVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGLKNLVE 263

Query: 213 EEAKNRKLAN 222
             A N +L++
Sbjct: 264 LWASNNELSS 273


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/77 (22%), Positives = 34/77 (44%)

Query: 137 YSVEQPAFADELDSIDANNLKCTSYKLNKLNNDRLLFSDILIATYLGLSLLENWKVLTDR 196
           Y     A   E+ +  +  L   + ++ +L  D  L    +  T + ++  E W ++T +
Sbjct: 579 YIAPLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRK 638

Query: 197 NNGLISIERNRLNLIEE 213
            N L  +   RL +I+E
Sbjct: 639 ANDLSYVNLVRLVIIDE 655


>SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 150

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 124 KTLSDMPILLAKKYSVEQPAFADELDSIDANNLKCTSYKLNKLNNDRLLFSDIL 177
           K L D+ +L    + VEQ     E+D ID   LKC    L   N   + ++ ++
Sbjct: 17  KELYDIYLLRTNVFVVEQKCAYPEVDEID---LKCGHLMLRNANGKLVAYARLI 67


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 186 LLENWKVLTDRNNGLISIERNRLNLIEEEAKNRKLANNL 224
           LL+  ++LT      + +E N+  L EEEAKN KL  +L
Sbjct: 406 LLDKDEILTKTQ---VWMELNKDYLAEEEAKNLKLQEDL 441


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 183 GLSLLENWKVLTDRNNGLI--SIERNRLNLIEEEAKN 217
           G +   NW+  TD+ N L+  + E+N L  I E AKN
Sbjct: 540 GRTYQSNWQKETDKKNSLVNEAEEKNDLEAI-EAAKN 575


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 69  WSDRRNPHEVLFAYSTRYA-----ITLWYFDAHEREEALRKYKERGQPSSTESNSEMRIQ 123
           W+++RNP +V + Y    +     I  W  D          Y+ + Q    +   E+ + 
Sbjct: 86  WTEKRNPKDVFWVYWRSISEWGNMILKWLSDMGREGSICTFYELQEQYKEVDCLDEVLLH 145

Query: 124 KTLSDMPILLAKKYSVE 140
           K L     LL KK ++E
Sbjct: 146 KVLE----LLMKKGNIE 158


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,102,827
Number of Sequences: 5004
Number of extensions: 47613
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 8
length of query: 224
length of database: 2,362,478
effective HSP length: 70
effective length of query: 154
effective length of database: 2,012,198
effective search space: 309878492
effective search space used: 309878492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)