GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005120-TA|BGIBMGA005120-PA|IPR002893|Zinc finger,
MYND-type
         (456 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   7.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   9.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 189 TGSNVLRTINSTDTNMPILPE 209
           TG  VLRT N++  ++  LPE
Sbjct: 258 TGLTVLRTFNASYNSLDSLPE 278


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 393 NIQIEYSTFNGSKPGPCLLSP 413
           NI +   +++G  P PC+L P
Sbjct: 23  NILMFLPSWDGKMPQPCILKP 43


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 218 PEASLKGSVAPFNHMLNSYYMDPSDPFYE 246
           P  ++ G +  F H+  SY  DP   + E
Sbjct: 356 PNQNVYGDLHNFGHVAISYIHDPDHRYLE 384


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,891
Number of Sequences: 429
Number of extensions: 4959
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 456
length of database: 140,377
effective HSP length: 60
effective length of query: 396
effective length of database: 114,637
effective search space: 45396252
effective search space used: 45396252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)