GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005118-TA|BGIBMGA005118-PA|IPR009292|Protein of unknown
function DUF947
         (238 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   5.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 171  QKNRDDIEKQFREGKQPHFKNKSELRVEALVKQYESLKNEGTSRVQRHLKRREQKMKK 228
            Q+ +   ++Q ++ +QP  + K    V  LV Q +   N G +R       ++Q+ ++
Sbjct: 1527 QQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQLQRGYNSGNNRSGEQANSQQQQQQQ 1584


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/48 (18%), Positives = 23/48 (47%)

Query: 189 FKNKSELRVEALVKQYESLKNEGTSRVQRHLKRREQKMKKRSHRAPAR 236
           + + + LR    +   +  KNE   +    ++ RE++ ++ S R  ++
Sbjct: 42  YSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQ 89


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.128    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,099
Number of Sequences: 429
Number of extensions: 3497
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 238
length of database: 140,377
effective HSP length: 56
effective length of query: 182
effective length of database: 116,353
effective search space: 21176246
effective search space used: 21176246
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)