GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005117-TA|BGIBMGA005117-PA|IPR004154|Anticodon-binding,
IPR009068|S15/NS1, RNA-binding, IPR004499|Prolyl-tRNA synthetase,
archael and euk type, IPR000738|WHEP-TRS, IPR002314|tRNA synthetase,
class II (G, H, P and S), IPR006195|Aminoacyl-transfer RNA synthetase,
class II
         (831 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   1.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   1.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   7.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   7.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 479 EGHTAFRTKEEAAEEKIHLSYDNGWFTDLYARVYEELLAIPVIKG 523
           E + +F+  E++   K  + YD    +D       EL+ +P +KG
Sbjct: 162 EPYASFKAMEDSVGGKCEVLYDIAPLSDFVIHRSPELVPMPTLKG 206


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 723 HAQMFERATKDRDARLSSVTKWEDFTAALEEKN 755
           HA +    TKD+      V +W DF     E+N
Sbjct: 257 HASLNHTLTKDQPETYELVKEWRDFVDNYAEEN 289


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 418 SELAEPIAVRPTSETVMYPAYAKWIQSHRDLPLKLNQWNNVV 459
           S   + +A  PT  + + P + + I  + +  L   +WNN +
Sbjct: 347 SSFGKILATEPTLFSNVTPKFPRNIDEYNNNDLDTKKWNNKI 388


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 15/79 (18%), Positives = 33/79 (41%)

Query: 738 LSSVTKWEDFTAALEEKNILLAPFCGEISCEDNIKNDSARTEDDPNVDVKAPAMGAKSLC 797
           LS+ T       A ++  + L       +   N   +S+  +  P ++  +   G+ +  
Sbjct: 512 LSTATSTCSLAVAKQQNQVPLTSSSNVNNNSGNGNTNSSARDSSPAIESISVDSGSINTV 571

Query: 798 IPFEPPRQLSESDRCIHPA 816
             +EPPR L  ++  + P+
Sbjct: 572 AEWEPPRALWPTEWKVRPS 590


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,882
Number of Sequences: 429
Number of extensions: 8149
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 5
length of query: 831
length of database: 140,377
effective HSP length: 63
effective length of query: 768
effective length of database: 113,350
effective search space: 87052800
effective search space used: 87052800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)