Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA005115-TA|BGIBMGA005115-PA|IPR005225|Small GTP-binding
protein domain, IPR001806|Ras GTPase, IPR013753|Ras, IPR003579|Ras
small GTPase, Rab type, IPR002078|Sigma-54 factor, interaction region
(202 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 324 6e-90
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 237 1e-63
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 185 4e-48
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 146 3e-36
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 142 3e-35
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 139 2e-34
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 124 9e-30
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 115 6e-27
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 107 9e-25
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 100 3e-22
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 98 7e-22
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 94 1e-20
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 91 8e-20
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 89 3e-19
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 87 2e-18
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 81 1e-16
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 75 7e-15
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 74 2e-14
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 60 3e-10
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 52 6e-08
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 49 6e-07
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 37 0.002
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 30 0.21
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.48
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 29 0.48
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 28 0.84
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 28 1.1
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M... 27 1.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.9
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 27 1.9
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 5.9
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 25 5.9
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 324 bits (796), Expect = 6e-90
Identities = 152/203 (74%), Positives = 175/203 (86%), Gaps = 1/203 (0%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQ 60
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT +L GKT+KLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVG 120
IWDTAGQERFRTITSSYYRGAHGIIIVYD TDQDSF+NVKQWL+EIDRYA + VN+LLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVG 120
Query: 121 NKCDLTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTGA 180
NK D+ KKVV++S AK++A+ L IPFLETSAK+STNVEQAF+TM+ +IK R+G + +
Sbjct: 121 NKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFAS 180
Query: 181 APA-GHVKIDQGQPIDTGKSSCC 202
+ A VK+ QG + S+CC
Sbjct: 181 SNAKSSVKVGQGTNVSQSSSNCC 203
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 237 bits (579), Expect = 1e-63
Identities = 103/166 (62%), Positives = 137/166 (82%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDT 64
YDYL KLLLIGDSGVGKSCLLLRF++D++T S+I+TIG+DFKIRT++L+GK IKLQIWDT
Sbjct: 6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDT 65
Query: 65 AGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCD 124
AGQERFRTIT++YYRGA GI+++YD TD+ SF NV+ W ++++A +NV K+L+GNKCD
Sbjct: 66 AGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCD 125
Query: 125 LTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIK 170
++ V F + A++LG+ FLE SAK + NV++AF T+A EIK
Sbjct: 126 CEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIK 171
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 185 bits (451), Expect = 4e-48
Identities = 94/181 (51%), Positives = 121/181 (66%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWD 63
EYDYLFK +LIGDSGVGKS LL+RF + + STIGV+F R + L+ K IK QIWD
Sbjct: 6 EYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWD 65
Query: 64 TAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKC 123
TAGQER+R ITS+YYRGA G +IVYD T Q SF NV +WL+E+ +A N+ +LVGNK
Sbjct: 66 TAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKT 125
Query: 124 DLTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTGAAPA 183
DL + V A+ +A + + F+ETSA +++NVE+AF T+ EI V S A
Sbjct: 126 DLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDD 185
Query: 184 G 184
G
Sbjct: 186 G 186
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 146 bits (353), Expect = 3e-36
Identities = 71/174 (40%), Positives = 106/174 (60%), Gaps = 5/174 (2%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLN----GKTIKLQ 60
YDYL K++L G SG GKSCLL RF + + + T+G+DF R + + K IKLQ
Sbjct: 6 YDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQ 65
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVG 120
IWDTAGQE+FR++ +YYRGA G ++VYD T++DSF + WL +I A + +L G
Sbjct: 66 IWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAG 125
Query: 121 NKCDLTTKKVVDFSTAKQYAEQLGIPFL-ETSAKNSTNVEQAFMTMAAEIKARV 173
+K DL ++ V A ++ + I ETS+ +NVE+ F+++ + I R+
Sbjct: 126 SKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTIITRI 179
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 142 bits (344), Expect = 3e-35
Identities = 69/158 (43%), Positives = 104/158 (65%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQE 68
FKL+ +G+ VGK+ L+ RF D + +Y +TIG+DF +T+ L +T++LQ+WDTAGQE
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 71
Query: 69 RFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCDLTTK 128
RFR++ SY R + IIVYD T+ +SF N ++W+E++ D+V +LVGNK DL K
Sbjct: 72 RFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADK 131
Query: 129 KVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMA 166
+ V ++ A++L I +ETSAK NV+ F +A
Sbjct: 132 RQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIA 169
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 139 bits (337), Expect = 2e-34
Identities = 73/194 (37%), Positives = 110/194 (56%), Gaps = 2/194 (1%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKT-IKLQIWDTAGQE 68
KL+L+GDS VGKS L+LRF D + + STIG F +T+ ++ T +KL+IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 69 RFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCDLT-T 127
R++++ YYR A+ I+VYD T S K W++E+ R A + + L GNK DL
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQE 135
Query: 128 KKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTGAAPAGHVK 187
++ V+ + A+ YA + + F ETSAK + NV + F +A ++ A V
Sbjct: 136 RRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLPLEDKLNQARGAVNRGVN 195
Query: 188 IDQGQPIDTGKSSC 201
+ + +P SC
Sbjct: 196 LSEARPAAQPSGSC 209
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 124 bits (299), Expect = 9e-30
Identities = 62/166 (37%), Positives = 106/166 (63%), Gaps = 6/166 (3%)
Query: 7 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAG 66
+L K++++G+SGVGK+ ++ ++ + +++ Y +TIG DF + V ++ K + LQ+WDTAG
Sbjct: 7 HLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAG 66
Query: 67 QERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYAC----DNVNKLLVGNK 122
QERF+++ ++YRGA ++VYD + SF + W +E A + +L+GNK
Sbjct: 67 QERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNK 126
Query: 123 CDL-TTKKVVDFSTAKQYAEQLG-IPFLETSAKNSTNVEQAFMTMA 166
D+ K++V S A + + G IP+ ETSAK + NV++AF T+A
Sbjct: 127 VDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVA 172
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 115 bits (276), Expect = 6e-27
Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 7/173 (4%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQ 60
M+ + K++++GDSGVGK+CL+ +F + ++ Y +TIG DF + V ++ K + LQ
Sbjct: 1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDN---VNKL 117
+WDTAGQERF+++ ++YRGA +IVY+ + SF +V+ W +E + +
Sbjct: 61 LWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFI 120
Query: 118 LVGNKCDL-TTKKVVDFSTAKQYAEQ---LGIPFLETSAKNSTNVEQAFMTMA 166
+VGN+ D +K+ V A Y + + E SAK +TNV F T++
Sbjct: 121 IVGNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVS 173
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 107 bits (258), Expect = 9e-25
Identities = 56/171 (32%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQ 60
M Y +KL+++GD GVGKS L ++ + + Y TI ++ + +++G+ L
Sbjct: 1 MRSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KKCEIDGEGALLD 59
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYAC-DNVNKLLV 119
+ DTAGQE + + Y R G ++VY+ T + SF + + ++I R D +LV
Sbjct: 60 VLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLV 119
Query: 120 GNKCDLTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIK 170
NKCDL ++VV + +Q A+ + ++ETSAK NVE+AF ++ I+
Sbjct: 120 ANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIR 170
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 99.5 bits (237), Expect = 3e-22
Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 11/187 (5%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQE 68
FKL+L+GD G GK+ + R + + YI+T+GV+ N I +WDTAGQE
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Query: 69 RFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCDLTTK 128
+ + YY II++D T + ++ NV W ++ R C+N+ +L GNK D+ +
Sbjct: 70 KLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGNKVDVKER 128
Query: 129 KVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTG--AAPA--- 183
KV + A + + + + + SAK++ N E+ F+ +A ++ VG P+ A+PA
Sbjct: 129 KVK--AKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL---VGNPNLEFVASPALAP 183
Query: 184 GHVKIDQ 190
V++DQ
Sbjct: 184 PEVQVDQ 190
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 98.3 bits (234), Expect = 7e-22
Identities = 58/182 (31%), Positives = 100/182 (54%), Gaps = 16/182 (8%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ T+ E Y+ T+ ++ + V+++G+ I+L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHIELALWDTAGQED 66
Query: 70 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEEIDRYACDNVNKLLVGNKCDL--- 125
+ + Y +H ++I + +S NV++ W+ E+ + C N+ LLVG K DL
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHF-CSNLPILLVGCKVDLRND 125
Query: 126 ---------TTKKVVDFSTAKQYAEQLG-IPFLETSAKNSTNVEQAFMTMAAEIKARVGP 175
T++K + F + A+++G +LE SAK + V + F T A + P
Sbjct: 126 PKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASMLKFKP 185
Query: 176 PS 177
S
Sbjct: 186 AS 187
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 93.9 bits (223), Expect = 1e-20
Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 2/171 (1%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 69
++ ++G VGKS L +++ ++ + ESY TI F + + G+ +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFS-KNIKYKGQEFATEIIDTAGQDE 66
Query: 70 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEI-DRYACDNVNKLLVGNKCDLTTK 128
+ + S + G HG ++VY T + SF VK ++I + + V ++VGNK DL +
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQ 126
Query: 129 KVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTG 179
+ V K A + + E SA+++ NV +AF + +EI+ + P G
Sbjct: 127 RAVTAEEGKALANEWKCAWTEASARHNENVARAFELIISEIEKQANPSPPG 177
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 91.5 bits (217), Expect = 8e-20
Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 19/187 (10%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 69
KL+++GD GK+CLL+ F+ T+ E Y+ T+ ++ + V+++G+ ++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHVELALWDTAGQED 66
Query: 70 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEEIDRYACDNVNKLLVGNKCDLTT- 127
+ + Y +H I+I + DS NV++ W+ E+ + C ++ LLV K DL
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHF-CSSLPILLVACKADLRND 125
Query: 128 -KKVVDFSTAKQY----------AEQLG-IPFLETSAKNSTNVEQAF--MTMAAEIKARV 173
K + + S Q+ A+++G +LE SAK + V + F T AA +K +
Sbjct: 126 PKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAMLKHKP 185
Query: 174 G-PPSTG 179
PS+G
Sbjct: 186 KVKPSSG 192
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 89.4 bits (212), Expect = 3e-19
Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 69
K++++GD GK+ LL F + + Y TI ++ I + ++G +I+L +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENY-IHDIFVDGNSIELSLWDTAGQEE 73
Query: 70 FRTITSSYYRGAHGIIIVYDCTDQDSFSNV-KQWLEEIDRYACDNVNKLLVGNKCDL--T 126
+ + S Y H I+I + +DS NV +WL E+ C V +LV KCDL
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSS-NCPGVKLVLVALKCDLRGA 132
Query: 127 TKKVVDFSTAKQYAEQL-------GIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPST 178
++ VD S Y E L + +LE SAK + V +AF T AA + P T
Sbjct: 133 DEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAF-TEAARVALAAQPRGT 190
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 87.0 bits (206), Expect = 2e-18
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 15/167 (8%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR-TVDLNGKTIKLQIWDTAGQE 68
KL+++GD G GK+CLL+ F+ T+ E Y+ T+ ++ T N K I+L +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 69 RFRTITSSYYRGAHGIIIVYDCTDQDSFSNV-KQWLEEIDRYACDNVNKLLVGNKCDLTT 127
+ + Y ++ I++ + S +NV ++W E+ + C +LVG K DL
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHF-CPRTPIVLVGLKADLRK 134
Query: 128 KK------------VVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAF 162
+ V + A+ A + P++E SAK +T V + F
Sbjct: 135 DRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVF 181
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 81.0 bits (191), Expect = 1e-16
Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 69
KL+++GD GK+ LL F + Y+ T+ ++ + ++GK+++L +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENY-VSDCRVDGKSVQLALWDTAGQEE 68
Query: 70 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVK-QWLEEIDRYACDNVNKLLVGNKCDLTTK 128
+ + Y AH I++ + DS NV +W+EEI+ C NV +LVG K DL +
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINT-LCPNVPFILVGMKADLRSD 127
Query: 129 KV 130
V
Sbjct: 128 PV 129
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 74.9 bits (176), Expect = 7e-15
Identities = 42/165 (25%), Positives = 82/165 (49%), Gaps = 6/165 (3%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 69
K+ +IGDS +GK+ L++ + ++ E T+GV+F +T+ + I IWD GQ
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 70 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCD--LTT 127
F + A I+ ++D + + + +++K+W + + V +L+G K D +T
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAV-PILIGTKYDHFMTF 130
Query: 128 KKVVDFSTAKQ---YAEQLGIPFLETSAKNSTNVEQAFMTMAAEI 169
+ KQ YA+ + + S +S NV++ F + A++
Sbjct: 131 PREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKV 175
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 73.7 bits (173), Expect = 2e-14
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 69
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV + + L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQED 63
Query: 70 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEEIDRYACDNVNKLLVGNKCDLTTK 128
+ + Y ++ + T SF NVK+ W E+ + C V L+VG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHH-CPGVPCLIVGTQIDLRDD 122
Query: 129 KVVDFSTAKQYAEQL 143
V A+Q+ L
Sbjct: 123 PSVQQKLARQHQHPL 137
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 59.7 bits (138), Expect = 3e-10
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 69
++L++G GK+ +L + +S ++ V F + TV K IK +WD GQ++
Sbjct: 23 RILMLGLDAAGKTTILYKLK---LNQSVVTIPTVGFNVETVTY--KNIKFNVWDVGGQDK 77
Query: 70 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEI--DRYACDNVNKLLVGNKCDL 125
R + Y+ G G+I V D D + S +Q L I DR D + L++ NK DL
Sbjct: 78 IRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCL-LLVLANKQDL 134
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 52.0 bits (119), Expect = 6e-08
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 69
++L++G GK+ +L + + I TIG F + TV+ + I +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--RNISFTVWDVGGQDK 73
Query: 70 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEE-IDRYACDNVNKLLVGNKCDL 125
R + Y++ GII V D D++ S + L+ ++ + L+ NK DL
Sbjct: 74 IRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDL 130
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 48.8 bits (111), Expect = 6e-07
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 69
++LL+G GK+ +L ++ E T G F+IRT+++ G ++ IWD GQ+
Sbjct: 18 RVLLLGLDNAGKTTILKCLLNEDVNE-VSPTFG--FQIRTLEVEG--LRFTIWDIGGQKT 72
Query: 70 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEI---DRYACDNVNKLLVGNKCD-- 124
R +Y+ II V D D + L+E+ ++ ++ L++ NK D
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSI--LVLANKSDVS 130
Query: 125 --LTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIK 170
L+++++ +Y F SA N++ A +A ++K
Sbjct: 131 GALSSEEISKILNISKYKSSHWRIF-SVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 36.7 bits (81), Expect = 0.002
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 69
K+L +G GK+ LL +D ++ + + +L ++ +D G ++
Sbjct: 22 KMLFLGLDNAGKTTLLHMLKNDR-----LAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQ 76
Query: 70 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEE-IDRYACDNVNKLLVGNKCD 124
R + Y+ +GI+ + DC D + S K L+ + V L++GNK D
Sbjct: 77 ARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKID 132
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 30.3 bits (65), Expect = 0.21
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 10 KLLLIGDSGVGKSCL-LLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQE 68
K+LL+G SG GKS + + F++ ++ +D + V G + L +WD GQE
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQE 62
Query: 69 RF 70
F
Sbjct: 63 AF 64
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 29.1 bits (62), Expect = 0.48
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLN---GKTIKLQIWDTAG 66
++++ GD GVGKS L+ E +++I F I ++ N + L + DT
Sbjct: 5 RVVICGDQGVGKSSLISALIQ----EDNVTSIPKVFPIISIPSNPDSNDDVSLVLVDTQS 60
Query: 67 QERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCD 124
R ++ + A+ I +VY +D S+ V + R NV +L NK +
Sbjct: 61 DSNEREYLAAEIKKANVICLVY--SDNYSYERVSIFWLPYFRSLGVNVPIVLCENKSE 116
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 29.1 bits (62), Expect = 0.48
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIW 62
P+YDYL ++ GD G G ++ + ES ++ I +D DL I L+ +
Sbjct: 157 PKYDYLLPIIADGDMGFGSVTSTMKMT-KRFVESGVAMIHLD------DL---AIGLKRF 206
Query: 63 DTAGQERFRTITSSYYRGAHGIIIVYD 89
T GQ R TS Y R + + +D
Sbjct: 207 -TVGQGRTVVPTSEYLRRLTAVRLQFD 232
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 28.3 bits (60), Expect = 0.84
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 26 LRFADDTYTES--YISTIGVDFKIRTVDLNGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83
LR+ D Y E +S + D+ GKT Q DT G F ++ + G
Sbjct: 176 LRYTDTHYLERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDG 235
Query: 84 IIIVYD 89
+++V D
Sbjct: 236 VVLVVD 241
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.1
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 95 SFSNVKQWLEEIDRYACDNVNKLLVGNKCDLTTKKVVDFSTAKQYAEQLGIPFLETSAKN 154
S S K+WL +++Y C + + ++G ++ +D S+ Q E L LE K+
Sbjct: 342 SHSTSKEWLSSLEQYHCTYLFRDVIG-------RRFLDQSSELQGIEILLKRVLEPYLKD 394
Query: 155 STNVEQAFMTMAAEIKARVGPPSTGAAPA 183
+ + + + A A + S G+A A
Sbjct: 395 QSKISEIAVKTAMASTADILSRSKGSATA 423
>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 106 IDRYACDNVNKLLVGNKCDLTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTN 157
+DR + + +G + D TTK+ D S + + + LG F+E K ST+
Sbjct: 127 VDRLVHKKLRWVTLGEQYDWTTKEYPDPSKSPGFPKDLG-DFVEKVVKESTD 177
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 12 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQI 61
+L+GD+ GK+C+L A + I + V+ T+DL G+ ++ I
Sbjct: 1873 ILVGDTATGKTCILRLLA--AIAGAKIKEMAVNSDTDTMDLIGEYEQIDI 1920
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 9 FKLLLIGDSGVGKSCLLLRFAD-DTYTESYISTIGVDFKIR---TVDLNGKTIKL 59
F +L++G+SG GKS L+ + D Y + S G DF + TV +N +++
Sbjct: 96 FNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTG-DFGVNPEPTVMINSSAVEI 149
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 5.9
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 24 LLLRFADDTYTE-SYI-STIGVDFKIRTVDLNGKTIKLQIWDTAGQERFRTITSSYYRGA 81
+L+R AD + E S++ + I +D I +VD G K +D Q T + +
Sbjct: 311 ILIRKADRSEEEVSFLLNEISLD-DIESVDFPGSQDKADDFDNILQVTLIDFTLARASYS 369
Query: 82 HGIIIVYDCTDQDSFSNVKQWLEEIDR 108
GII + D D F+ V + +I R
Sbjct: 370 QGIISYNEFNDPDLFNGVDDYQFDIYR 396
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 88 YDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGN-----KCDLTTKKVVDFSTAKQYAEQ 142
+D +D F ++ E CDNV LVGN K + + + +D ++ Y+++
Sbjct: 73 FDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQR 132
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 903,620
Number of Sequences: 5004
Number of extensions: 34928
Number of successful extensions: 146
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 34
length of query: 202
length of database: 2,362,478
effective HSP length: 69
effective length of query: 133
effective length of database: 2,017,202
effective search space: 268287866
effective search space used: 268287866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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