GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005115-TA|BGIBMGA005115-PA|IPR005225|Small GTP-binding
protein domain, IPR001806|Ras GTPase, IPR013753|Ras, IPR003579|Ras
small GTPase, Rab type, IPR002078|Sigma-54 factor, interaction region
         (202 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.66 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.6  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 94  DSFSNVKQWLEEIDRYACDNVNKLLVGNKCDLTTKKVVDF-STAKQYAEQLGIPF---LE 149
           +++  VK+W + +D YA +N    +V     L T+      +T K Y     +PF     
Sbjct: 270 ETYELVKEWRDFVDNYAEENKRDEIV-----LLTEAYSSLENTLKYYEVGSNVPFNFKFI 324

Query: 150 TSAKNSTNVEQ 160
           T A +S+  EQ
Sbjct: 325 TDANSSSTPEQ 335


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 177 STGAAPAGHVKIDQGQPIDTGK 198
           S    P+G+++   G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 177 STGAAPAGHVKIDQGQPIDTGK 198
           S    P+G+++   G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 177 STGAAPAGHVKIDQGQPIDTGK 198
           S    P+G+++   G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 177 STGAAPAGHVKIDQGQPIDTGK 198
           S    P+G+++   G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 177 STGAAPAGHVKIDQGQPIDTGK 198
           S    P+G+++   G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 177 STGAAPAGHVKIDQGQPIDTGK 198
           S    P+G+++   G PI TG+
Sbjct: 357 SAANPPSGYIRSAFGTPISTGR 378


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 177 STGAAPAGHVKIDQGQPIDTGK 198
           S    P+G+++   G PI TG+
Sbjct: 425 SAANPPSGYIRSAFGTPISTGR 446


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 177 STGAAPAGHVKIDQGQPIDTGK 198
           S    P+G+++   G PI TG+
Sbjct: 425 SAANPPSGYIRSAFGTPISTGR 446


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,022
Number of Sequences: 429
Number of extensions: 2149
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 202
length of database: 140,377
effective HSP length: 55
effective length of query: 147
effective length of database: 116,782
effective search space: 17166954
effective search space used: 17166954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)