GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA005113-TA|BGIBMGA005113-PA|IPR011053|Single hybrid
motif, IPR006255|Dihydrolipoamide succinyltransferase,
IPR000089|Biotin/lipoyl attachment, IPR001078|Catalytic domain of
components of various dehydrogenase complexes
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...   268   9e-73
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...   117   3e-27
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    34   0.038
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    27   3.3  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   5.7  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    27   5.7  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    27   5.7  

>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score =  268 bits (657), Expect = 9e-73
 Identities = 136/236 (57%), Positives = 162/236 (68%), Gaps = 4/236 (1%)

Query: 141 SGTRTEHPVPMNKMRKRISERLKEAQNTTAMLTTFNECDMSKLMAFRKANLEAFTKKYGV 200
           S +R E  V MN+MR RI+ERLKE+QN  A LTTFNECDMS ++A RK   +   K+ GV
Sbjct: 215 SFSRNEDRVKMNRMRLRIAERLKESQNRAASLTTFNECDMSAVVALRKKYKDEILKETGV 274

Query: 201 KLSFMSPFLKASANALMDQPXXXXXXXXX----XXXYRDYVDISVAVATPRGLVVPVLRN 256
           K+ FMS F KA   A+   P                YRD+ D+S+AVATP+GLV PV+RN
Sbjct: 275 KIGFMSFFSKACTQAMKQIPAINGSIEGEGKGDTLVYRDFCDLSIAVATPKGLVTPVIRN 334

Query: 257 VESMDYPRIELAMGALAEKARTGKLTPADMQGGTFTISNGGVFGSLLSMPIINLPQSAIL 316
            ESM    IE A+  L  KAR GKL   DM  GTFTISNGG+FGSL   PIINLPQ+A+L
Sbjct: 335 AESMSLLEIESAIATLGSKARAGKLAIEDMASGTFTISNGGIFGSLYGTPIINLPQTAVL 394

Query: 317 GMHAIFQRPVAINGKVEIRPMMYLALTYDHRLIDGREAVLFLRKVKSGVEDPTSIL 372
           G+HAI +RPV ING+V  RPMMYLALTYDHR++DGREAV FLR VK  +EDP  +L
Sbjct: 395 GLHAIKERPVVINGQVVPRPMMYLALTYDHRMVDGREAVTFLRLVKEYIEDPAKML 450



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 2   DEVVLEIETDKTALPVMSPGNGKIVKMLVKEGESVKSQQPL 42
           DE +  +ETDK   PV +P  G + + LVKEG+++   Q +
Sbjct: 73  DEEIASVETDKIDAPVTAPDAGVLKEQLVKEGDTITIDQDI 113


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score =  117 bits (281), Expect = 3e-27
 Identities = 77/227 (33%), Positives = 112/227 (49%), Gaps = 5/227 (2%)

Query: 149 VPMNKMRKRISERLKEAQNTTAMLTTFNECDMSKLMAFRKANLEAFTKKYGVKLSFMSPF 208
           +P++ MRK I+ RL E++N           +M K++  R A       +Y  KLS     
Sbjct: 258 LPLSNMRKIIASRLAESKNMNPHYYVTVSVNMEKIIRLRAALNAMADGRY--KLSVNDLV 315

Query: 209 LKASANALMDQPXXXXXXXXXXXXYRDYVDISVAVATPRGLVVPVLRNVESMDYPRIELA 268
           +KA+  AL   P                VDIS+AVATP GL+ PV+RN  ++    I   
Sbjct: 316 IKATTAALRQVPEVNAAWMGDFIRQYKNVDISMAVATPSGLITPVIRNTHALGLAEISTL 375

Query: 269 MGALAEKARTGKLTPADMQGGTFTISNGGVFGSLLSMPIINLPQSAILGMHAIFQR--PV 326
                ++AR  KL P + QGGTFTISN G+F       IIN PQ+ IL +        P 
Sbjct: 376 AKDYGQRARNNKLKPEEYQGGTFTISNLGMFPVDQFTAIINPPQACILAVGTTVDTVVPD 435

Query: 327 AINGK-VEIRPMMYLALTYDHRLIDGREAVLFLRKVKSGVEDPTSIL 372
           + + K  ++ P+M   L+ DHR++DG  A  F   +K  +E+P  I+
Sbjct: 436 STSEKGFKVAPIMKCTLSSDHRVVDGAMAARFTTALKKILENPLEIM 482



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 3   EVVLEIETDKTALPVMSPGNGKIVKMLVKEG-ESVKSQQPL 42
           +V+ EIETDK  +       G + K+L++ G + V   +PL
Sbjct: 85  DVLCEIETDKAQIDFEQQDEGYLAKILIETGTKDVPVGKPL 125


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 33.9 bits (74), Expect = 0.038
 Identities = 12/34 (35%), Positives = 24/34 (70%)

Query: 3   EVVLEIETDKTALPVMSPGNGKIVKMLVKEGESV 36
           +++LE+ETDK  + V    NG + K+L+++G ++
Sbjct: 67  DILLEVETDKATMDVEVQDNGILAKVLIEKGSNI 100


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 137 TKTISGTRTEHPVPMNKMRKRISERLKEAQNTTAMLTTFNECDMSKLMAFRKANLEAFTK 196
           T  +S  +      +   R + SER +   N ++ L+T+     + + A  KA LE+FTK
Sbjct: 105 TNLVSAIKLSKMAILEWFRNKNSERDRLILNISSRLSTY-ALPGTSVYAASKAGLESFTK 163

Query: 197 KYGVKLSFMSPFLKASANALMDQP 220
               +++     + A +   +D P
Sbjct: 164 VLAAEVASKGIRVNAISPGYVDTP 187


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 317 GMHAIFQRPVAINGKVEIRPMMYLALTYDHRLIDGREAVLFLRKVKSGVEDP 368
           GM ++FQR ++I+    +R +  L   Y+ R++        L K++  VE+P
Sbjct: 453 GMKSLFQRLLSISLNENVRAIHKLISRYEARIVSPE----ILTKIQEQVENP 500


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 309 NLPQSAILGMHAIFQRPVAINGKVEI 334
           +LP+ A+L +HA+F  PV++   VE+
Sbjct: 324 DLPRLALLMIHAVFTSPVSLAQWVEL 349


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 2   DEVVLEIETDKTALPVMSPGNGKIVKMLVKEGESVKSQQPLFQ 44
           D+  +    D   + V   G+G+ V+ L KEG  + S   ++Q
Sbjct: 186 DQTKIHPPKDVDVILVAPKGSGRTVRTLFKEGRGINSSFAVYQ 228


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,192,228
Number of Sequences: 5004
Number of extensions: 39965
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 9
length of query: 375
length of database: 2,362,478
effective HSP length: 74
effective length of query: 301
effective length of database: 1,992,182
effective search space: 599646782
effective search space used: 599646782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)